View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_high_6 (Length: 431)
Name: NF4731_high_6
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 53627453 - 53627051
Alignment:
| Q |
20 |
cagggaaggtatgtgccacattgttttttgtacaaaagttaacatgcacttcaccggacttcgaatgcaccaaggaagcttccacccattatttatcaca |
119 |
Q |
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| T |
53627453 |
cagggaaggtatgtgccacattgttttttgtacaaaagttaacatgcacttcaccggatttcgaatgcaccaaggaagcttccacccattatttatcaca |
53627354 |
T |
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| Q |
120 |
aacaaaattaagcagctaaatactatataatctggatttccatttattatactacttaaagctatgatggtagcctactcctaacataaaaaagaagaaa |
219 |
Q |
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| T |
53627353 |
agcaaaattaagcagctaaatactatataatctggatttccatttattatactacttaaagctatgatggtagcctactcctaacataaaaaagaagaaa |
53627254 |
T |
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| Q |
220 |
tataacttccacacagagcttgatgttgctttctacatagcattctggaatatcatctcggctagctcctgtaaaacataaaacagagacatttattaga |
319 |
Q |
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| T |
53627253 |
tataacttccacacagagcttgatgttgctttctacatagcattctggaatatcatctcggctagctcctgtaaaacataaaacagagacatttattaga |
53627154 |
T |
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| Q |
320 |
atctaagtttgttgattaagaaaatactgacagcggactaaaacttcaaccggtataaaatatataataacagcttgcttaagaaacaaatctctttgat |
419 |
Q |
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| T |
53627153 |
atctaagtttgttgattaagaaaatactgacagcggactaaaacttcaactggtataaaatatataataacagcttgcttaagaaacaaatctctttcat |
53627054 |
T |
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| Q |
420 |
gat |
422 |
Q |
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| T |
53627053 |
gat |
53627051 |
T |
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