View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_1 (Length: 516)
Name: NF4731_low_1
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 51302457 - 51301970
Alignment:
| Q |
19 |
gtaatgtctatgtaaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302457 |
gtaatgtctatgtaaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaat |
51302358 |
T |
|
| Q |
119 |
caagttttaaagtggagaatttctcgctgtttcaagttttggtgaagtctgttagttattctggtgggaggcttt-ctttggttgtatgagtttggtgcg |
217 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
51302357 |
caagttttaaagtggagaatttcttgctgtttcaagttttggtgaagtctgttagttattctggtgggaggcttttctttggttgtatgagtttgttgcg |
51302258 |
T |
|
| Q |
218 |
aaggagttaggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302257 |
aaggagttaggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttat |
51302158 |
T |
|
| Q |
318 |
ctgttctgtgtccagcttgcctctttgttccatcctagcacatctcatgcttgagtgtggttttaatataagtataagttgctctatgacgcttttgtta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
51302157 |
ctgttctgtgtccagcttgcctctttgttccatcctagcacatctcatgcttgagtttggttttaatacaagtataagttgctctatgacgcttttgtta |
51302058 |
T |
|
| Q |
418 |
nnnnnnnnnnnnnatacctaatgactgcgttttgtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatgt |
506 |
Q |
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||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51302057 |
-tttttcttttttataccaaatgactgcgtttggtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatgt |
51301970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 7e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 27 - 340
Target Start/End: Complemental strand, 44113521 - 44113227
Alignment:
| Q |
27 |
tatgtaaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagtttt |
126 |
Q |
| |
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|||| ||||||||||||||||||||| ||||| || ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| |
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| T |
44113521 |
tatgcaaggcatgtccttgctttgtaaggtattcatatctaggtggaagctgtgatgagtttttatttttgaa----------gcttgaaatagagtttg |
44113432 |
T |
|
| Q |
127 |
aaagtggagaatttctcgctgtttcaagttttggtgaagtctgttagttattctggtgggaggc-tttctttggttgtatgagtttggtgcgaaggagtt |
225 |
Q |
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|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
44113431 |
aaagtggagaatttcttactatttcaagttttggtgaagtctgttagttattctggtgggaggcttttctttggttgtatgagttaggtgcgaaggagtt |
44113332 |
T |
|
| Q |
226 |
aggtgcatttttagcatgttcaagcagtgctttgtgttgtgtgctactgctggatattttgcttgccttggggatttgttcttggtttttatctgttctg |
325 |
Q |
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|||| |||||||||| |||||||| | ||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
44113331 |
aggtacatttttagcctgttcaagtattgc------ttgtgtgctactgctggaaattttgcttg---tggggatttgttcttgg-ttttgtctgttctg |
44113242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 506
Target Start/End: Complemental strand, 44113124 - 44113049
Alignment:
| Q |
432 |
tacctaatgactgcgttttgtattaattcctcgtttggttgt-aaaattatgatattttatcaagtttgatgatgt |
506 |
Q |
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|||| ||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
44113124 |
taccaaatgactgcttttagtattaattcctcatttggttgtaaaaattatgatattttatcaagtttaatgatgt |
44113049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 175
Target Start/End: Complemental strand, 50016371 - 50016238
Alignment:
| Q |
32 |
aaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttttaaagt |
131 |
Q |
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||||||||||||||||||||| ||||| || ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| ||||| |
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| T |
50016371 |
aaggcatgtccttgctttgtaaggtattcatatctaggtggaagctgtgatgagtttttatttttgaa----------gcttgaaattgagtttgaaagt |
50016282 |
T |
|
| Q |
132 |
ggagaatttctcgctgtttcaagttttggtgaagtctgttagtt |
175 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||||| |
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| T |
50016281 |
ggagaatttcttactatttcaagttttggtgaagtctgttagtt |
50016238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 18843430 - 18843337
Alignment:
| Q |
32 |
aaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttt |
125 |
Q |
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|
||||||||| |||||||| || |||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18843430 |
aaggcatgtacttgctttctaaggtatccatatctaggtgaaagctgtgatgattttttatttttgaatagtcttgaagcttgaaatcaagttt |
18843337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 32 - 125
Target Start/End: Complemental strand, 18854898 - 18854805
Alignment:
| Q |
32 |
aaggcatgtccttgctttgtagggtatccacatctagggagaagcaatgatgagtttttatttttgaatagtcttgaagcttgaaatcaagttt |
125 |
Q |
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||||||||| |||||||| || |||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
18854898 |
aaggcatgtacttgctttctaaggtatccatatctaggtgaaagctgtgatgattttttatttttgaatagtcttgaagcttgaaatcaagttt |
18854805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 451 - 506
Target Start/End: Complemental strand, 50016047 - 50015992
Alignment:
| Q |
451 |
gtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatgt |
506 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
50016047 |
gtattaattcctcatttggttgtaaaattatgatattttatcaagtttaatgatgt |
50015992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 451 - 505
Target Start/End: Complemental strand, 18843221 - 18843167
Alignment:
| Q |
451 |
gtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatg |
505 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||| |||||| |||||| |
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|
| T |
18843221 |
gtattaattccttgtctggttgtaaaattatgatattttatgaagtttaatgatg |
18843167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 451 - 505
Target Start/End: Complemental strand, 18854689 - 18854635
Alignment:
| Q |
451 |
gtattaattcctcgtttggttgtaaaattatgatattttatcaagtttgatgatg |
505 |
Q |
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|||||||||||| || ||||||||||||||||||||||||| |||||| |||||| |
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| T |
18854689 |
gtattaattccttgtctggttgtaaaattatgatattttatgaagtttaatgatg |
18854635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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