View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_10 (Length: 397)
Name: NF4731_low_10
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 379
Target Start/End: Complemental strand, 42365477 - 42365109
Alignment:
| Q |
11 |
cacagaagagtggttttttcttcctgtttgagatcttgttgttgtgaatagagaagatttgaaatgtgaggagttgcatgtgttgtgtggggaataatga |
110 |
Q |
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| T |
42365477 |
cacagaagagtggttttttcttcctgtttgagatcttgttgttgtgaatagagaagatttgaaatgtgaggagttgcatgtgttgtgtggggaataatga |
42365378 |
T |
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| Q |
111 |
gagaaatggaatgggtgggaaattagtttacacgtagtccacaagagtttcttttgtatggtaagtgacaaatctacgtgtcttgtttcagatgtgattt |
210 |
Q |
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| T |
42365377 |
gagaaatggaatgggtgggaaattagtttacacgtagtccacaagagtttcttttgtatggtaagtgacaaatctacgtgtcttgtttcagatgtgattt |
42365278 |
T |
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| Q |
211 |
ttagatgtgtggcttaattcttatttggtgagagctataaaatgtcaaaatggaacatacat----acattaaaataaagtatgtgggattccttggatt |
306 |
Q |
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| T |
42365277 |
ttagatgtgtggcttaattcttatttggtgagagctataaaatgtcaaaatggaacatacatacatacattaaaataaagtatgtgggattccttggatt |
42365178 |
T |
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| Q |
307 |
gatttttggaggattgtgaggttgatgttgatctgcatgtctaattatatatatatgtctcttggctatcaac |
379 |
Q |
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| T |
42365177 |
gatttttggaggattgtgaggttgatgttgatctgcatgtctaat----tatatatgtctcttggctatcaac |
42365109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 200
Target Start/End: Original strand, 26123022 - 26123063
Alignment:
| Q |
159 |
ttcttttgtatggtaagtgacaaatctacgtgtcttgtttca |
200 |
Q |
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| T |
26123022 |
ttcttttgtatggtatgtgacaaacgtacgtgtcttgtttca |
26123063 |
T |
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