View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_11 (Length: 396)
Name: NF4731_low_11
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Complemental strand, 42063139 - 42062752
Alignment:
| Q |
1 |
aaggggagttgaactggttcttggaaaaaggtgcagcgtcaaagctgtagatcctaaagctaagccagttaatctatgttttgtgctcgtgtttattttt |
100 |
Q |
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| T |
42063139 |
aaggggagttgaaatggttcttggacaaaggtgctgcgtcaaagctgtagatcctgaagctaagccagttaatctatgtgttgtgctcgtgtttattttg |
42063040 |
T |
|
| Q |
101 |
gcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgcagcaataagagga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
42063039 |
gcaataatgagtttgtgtaatggatcacataactagtactgattctccatatctcagtgatagttgacactggagagggatctttgtagcaataagagga |
42062940 |
T |
|
| Q |
201 |
taaagtgaagaaagagtgcaatgcgaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattaatgtgaagtaactcaccctccccct |
300 |
Q |
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||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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| T |
42062939 |
taaagtgaagaaagagtgcaaggcaaagttcttttggttcaaagtctaaaatttcccttgataggtttcccattattgtgaagcaactcaccctccccct |
42062840 |
T |
|
| Q |
301 |
catccttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg |
388 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42062839 |
catctttcgtattcatttcagttgggatgcttccagcggaaggctgagttacgttcattacttagctgatcagattggtatgatgatg |
42062752 |
T |
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