View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_12 (Length: 380)
Name: NF4731_low_12
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 42529751 - 42529436
Alignment:
| Q |
1 |
aagccatcctcaatggatataatcttgattggaatatgatcacttcttctttggaagatgaataacataatgccagaactgat------------aacat |
88 |
Q |
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| T |
42529751 |
aagccatcctcaatggatataatcttgattggaatatgatcacttcttctttggaagatgaataacatgatgccagaactgatgttgatccgttgaacat |
42529652 |
T |
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| Q |
89 |
tgctaaatgaaaacgagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcgcagagtaggttaggaccttgacattaacatc |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42529651 |
tgctaaatgaaaacgagtatagaaaagtgtagtttttaaggtcaaaaaccttgaacatactatcttgcgcagagtaggttaagaccttgacattaacatc |
42529552 |
T |
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| Q |
189 |
atcaaattttacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatttccaa |
288 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42529551 |
atcaaattttacaacaaaagaatctgactgaaaaagatcaaaaccggcatccggcttggccctccttgtgtattcaatacttgttgatctgtatttccaa |
42529452 |
T |
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| Q |
289 |
gaactgagattcccat |
304 |
Q |
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| T |
42529451 |
gaactgagattcccat |
42529436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 283
Target Start/End: Complemental strand, 42535471 - 42535179
Alignment:
| Q |
3 |
gccatcctcaatggatataatcttgattggaatatgatcacttcttctttggaagatgaataacataatgccagaactgat------------aacattg |
90 |
Q |
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| T |
42535471 |
gccatcctcaatggatataatcttgactggaatatggtcacttgttcttttgaagatgaataacatgatgccagaactgatgttgatccaatcaacattg |
42535372 |
T |
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| Q |
91 |
ctaaatgaaaacgagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcgcagagtaggttaggaccttgacattaacatcat |
190 |
Q |
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| T |
42535371 |
ctaaatgaaaacaagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatactatcttgcgcagagtaggttaggaccttggcattaacatcat |
42535272 |
T |
|
| Q |
191 |
caaattttacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtattcaatacttgttgatctgtatt |
283 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| |
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| T |
42535271 |
caaatttcacaacaaaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtcttcaatgcgtgttgatctgtatt |
42535179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 367
Target Start/End: Complemental strand, 42535149 - 42535104
Alignment:
| Q |
322 |
gtaataaggcagtcattgttcttgttgtagaagaggctcttgatga |
367 |
Q |
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| T |
42535149 |
gtaataagtgagtcattgttcttgttgtagaagagtctcctgatga |
42535104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 262 - 359
Target Start/End: Complemental strand, 27821993 - 27821896
Alignment:
| Q |
262 |
tcaatacttgttgatctgtatttccaagaactgagattcccatgaccgtaatcagacagcgtaataaggcagtcattgttcttgttgtagaagaggct |
359 |
Q |
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| T |
27821993 |
tcaatccttgttgatctgcacttcaaagaactgaaattctcagaagcataaacagacactgtaataagtgagtcattgttcttgttgtagaagaggct |
27821896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 27822355 - 27822302
Alignment:
| Q |
96 |
tgaaaacgagtatagaaaagtgtagtttttaagatcaaaaaccttgaatatact |
149 |
Q |
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| T |
27822355 |
tgaaatcgagtatagcaaagtgtagtttttaagatcgaagaccttgtatatact |
27822302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 261
Target Start/End: Complemental strand, 27822138 - 27822082
Alignment:
| Q |
205 |
aaagactctgactgaaaaagatcaaaaccggcatccggcttggccctccttatgtat |
261 |
Q |
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| T |
27822138 |
aaagactcggactggaaaagaggaaaaccagcatccggcttggccctctttatgtat |
27822082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 27822207 - 27822159
Alignment:
| Q |
148 |
ctatcttgcgcagagtaggttaggaccttgacattaacatcatcaaatt |
196 |
Q |
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| T |
27822207 |
ctatcctgcgcagagtatgttaggacctttgcattaacatcatcaaatt |
27822159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 27824670 - 27824592
Alignment:
| Q |
3 |
gccatcctcaatggatataatcttgattggaatatgatcacttcttctttggaagatgaataacataatgccagaactg |
81 |
Q |
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| T |
27824670 |
gccatcctcaatggatataattttcagtggaatatgaccacttgctctattgaatattaataacatgatgccaggactg |
27824592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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