View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_16 (Length: 351)
Name: NF4731_low_16
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 23 - 333
Target Start/End: Original strand, 40234 - 40544
Alignment:
| Q |
23 |
tagcattgtggtgctcctagtacttattgtatttgaaccactcttttaacgaatgaatttnnnnnnnnnnnnnnnnnnnnnncactcccgaccctacccg |
122 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
40234 |
tagcattgcggtgctctcagtacttattgtatttgaaccactcttttaacgaatgaatttaaaaatgaaatgaaaaaataaacactcccgaccctacccg |
40333 |
T |
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| Q |
123 |
acgtggaagcacggaattcatcatattttgtgtggcttggttgtaaagttacatgttcgaaattatccattcgattcctgtcagttgtcagtccaattca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40334 |
acgtggaagcacggaattcatcatattttgtgtggcttggttgtaaagttacatgttcgaaattatccattcgattcctgtcagttgtcagtccaattca |
40433 |
T |
|
| Q |
223 |
catttgaagttgacattcaaatgagggatcacacacgagccactgcattttcaattcattatgcttagtttagtttgagtttagaacatttttacaaaca |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40434 |
catttgaagttgacattcaaatgagggatcacacacgagccactgcattttcaattcattatgcttagtttagtttgagtttagaacatttttacaaaca |
40533 |
T |
|
| Q |
323 |
atgagtacctc |
333 |
Q |
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||||||||||| |
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| T |
40534 |
atgagtacctc |
40544 |
T |
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