View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_17 (Length: 342)
Name: NF4731_low_17
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 6500772 - 6500460
Alignment:
| Q |
20 |
gcacacaggctgtccaacacgttcaggatactccccaacagtcctagaagcagctccaataacctaaaagcaaacacattcacatattaccaaattaaga |
119 |
Q |
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| T |
6500772 |
gcacacaggctgtccaacacgttcaggatactccccaacagtcctagaagcagctccaataacctaaaagcaaacacattcacatattaacaaattaaga |
6500673 |
T |
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| Q |
120 |
aaacacaatcaatgtacacaaaatacaaaacatgaaaatgaaagagttgattaccgcggcacggtcacgaggatgattgaaccgacacctagaaccaaag |
219 |
Q |
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| T |
6500672 |
aaacacaatcaatgtacacaaaatacaaaacatgaaaatgaaagagttgattaccgcggcacggtcacggggatgattgaaccgacacctagaaccaaag |
6500573 |
T |
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| Q |
220 |
ccacaaaaaccagttctcaaatagtaagtacaatcaacctcatcaggtcgttgtggataggaatcttcaccactaccaccactacctaaccccaattgcc |
319 |
Q |
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| T |
6500572 |
ccacaaaaaccagttctcaaatagtaagtacaatcaacctcatcaggtcgttgtggataggaatcttcaccactaccaccactacctaaccccaattgcc |
6500473 |
T |
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| Q |
320 |
acacaggttctgc |
332 |
Q |
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| T |
6500472 |
acataggttctgc |
6500460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 170 - 278
Target Start/End: Original strand, 49394324 - 49394432
Alignment:
| Q |
170 |
ttaccgcggcacggtcacgaggatgattgaaccgacacctagaaccaaagccacaaaaaccagttctcaaatagtaagtacaatcaacctcatcaggtcg |
269 |
Q |
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|||||||| |||||||||| ||||| || |||||||||||||||||| | || |||||||| || |||||||| || |||||||| | ||||||||||| |
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| T |
49394324 |
ttaccgcgccacggtcacgtggatggttaaaccgacacctagaaccataaccgcaaaaacctgtcctcaaataatagatacaatcagcttcatcaggtcg |
49394423 |
T |
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| Q |
270 |
ttgtggata |
278 |
Q |
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| T |
49394424 |
ttgtggata |
49394432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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