View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_18 (Length: 329)
Name: NF4731_low_18
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 14208573 - 14208891
Alignment:
| Q |
1 |
tgtagtatatgagggagcaaactgatgtgctaaagttcagacctgcctcaaggatttgtgtatgaacacaagaaatacgctgctcttaccaccatgatga |
100 |
Q |
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| T |
14208573 |
tgtagtatatgagggagcaaactgatgtgctaaagttccgacctgcctcaaggatttgtgtatgaacacaagaaatacgctgctcttaccaccatgatga |
14208672 |
T |
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| Q |
101 |
ttaaggtgatgcnnnnnnntaaattagttagtgcttactgcaatttaattactgtttatactaaagttgcaatatggctcaaggatttgatgaatcatgc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14208673 |
ttaaggtgatgcaaaaaaataaattagttagtgcttactgcaatttaattactgtttatactaaagttgcaatatggctcaaggatttgatgaatcatgc |
14208772 |
T |
|
| Q |
201 |
taattatgagtaatttactaaagttctttaacgtagataatgtttttccagtgttacaagttggtacgtaaatgagtacttactgatgtgtttggaagta |
300 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14208773 |
taattatgagtaatttactaaagttctttaacttagataatgtttttccagtgttacaagttggtacgtaaatgagtacttactgatgtgtttggaagta |
14208872 |
T |
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| Q |
301 |
agaaatcagctaccctatg |
319 |
Q |
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||||||||||||||||||| |
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| T |
14208873 |
agaaatcagctaccctatg |
14208891 |
T |
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