View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4731_low_28 (Length: 246)
Name: NF4731_low_28
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_28 |
 | |
|
| [»] scaffold0190 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7606387 - 7606164
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606387 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca |
7606288 |
T |
|
| Q |
101 |
tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7606287 |
tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt |
7606188 |
T |
|
| Q |
201 |
aaatgtatttgctggaatagaaga |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7606187 |
aaatgtatttgctggaatagaaga |
7606164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7637218 - 7636992
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctag---catgtccaataataatt |
97 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||| |||||| |||| || ||||||| |
|
|
| T |
7637218 |
attgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaagcttttttaggcttgctaagaacatggtaaaaaataatt |
7637119 |
T |
|
| Q |
98 |
tcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
7637118 |
tcatatccattagtagttctccatggtttgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggact |
7637019 |
T |
|
| Q |
198 |
tgtaaatgtatttgctggaatagaaga |
224 |
Q |
| |
|
| | | |||||||| ||||||||||| |
|
|
| T |
7637018 |
tattacggtatttgccggaatagaaga |
7636992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7615401 - 7615178
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca |
100 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| | ||| |||| | || |||||||||| |
|
|
| T |
7615401 |
attgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaagctttgctaggtatcctaacatggcaaaaaataatttca |
7615302 |
T |
|
| Q |
101 |
tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt |
200 |
Q |
| |
|
|| ||||||| |||||||| |||||||||||||||||||||||||| || |||||||| ||| | ||||||||||||||||||||| ||||||| || | |
|
|
| T |
7615301 |
tagccattagcagttctccgtggtttgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttat |
7615202 |
T |
|
| Q |
201 |
aaatgtatttgctggaatagaaga |
224 |
Q |
| |
|
| || ||||||||||||||||| |
|
|
| T |
7615201 |
tacggtttttgctggaatagaaga |
7615178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 28 - 224
Target Start/End: Original strand, 7656132 - 7656328
Alignment:
| Q |
28 |
aagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttg |
127 |
Q |
| |
|
|||||| | |||||||| ||||| |||||||||| |||| ||||| ||| |||| || || ||| ||||| | ||||||| ||||||||| ||||| |
|
|
| T |
7656132 |
aagaatgattatgagtcatggttgagaaatccaaactttattaggcttgatagcttgagcactaagaattttttggccattagcagttctccaaagtttg |
7656231 |
T |
|
| Q |
128 |
atgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaaga |
224 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| | ||||||||||||||| |||||| ||||||||| || || ||||||||||||||||| |
|
|
| T |
7656232 |
atgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaaga |
7656328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 7633541 - 7633443
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggtta---agaaatccaagctttgttagggttgctagcatgtccaataataat |
96 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7633541 |
attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccaggctttgttagggttgctagcatgaccaataataat |
7633443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7628772 - 7628708
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctt |
65 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
7628772 |
attgcttcacacactgatgagatgttgaagaatcactacgagtcttggttaaaaaatccaagctt |
7628708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 7628669 - 7628616
Alignment:
| Q |
171 |
tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaaga |
224 |
Q |
| |
|
|||||||||||||||||| || ||| |||| ||||||||||||||||||||||| |
|
|
| T |
7628669 |
tcgtagtggatataaaatgaaaggacttgttaatgtatttgctggaatagaaga |
7628616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 143
Target Start/End: Complemental strand, 39097738 - 39097703
Alignment:
| Q |
108 |
tagtagttctccatggtttgatgtttatggtaatga |
143 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
39097738 |
tagtagttctccaaggtttgatgtttatggtaatga |
39097703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 155
Target Start/End: Complemental strand, 39088060 - 39088014
Alignment:
| Q |
109 |
agtagttctccatggtttgatgtttatggtaatgatttcggatgggg |
155 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||| || ||||| |
|
|
| T |
39088060 |
agtagttctccaaggtttgatgtttatgataatgattttggttgggg |
39088014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 8941738 - 8941927
Alignment:
| Q |
34 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcatatccattagtagttctccatggtttgatgttt |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8941738 |
cactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttcttatccattagtagttctccatggtttgatgttt |
8941837 |
T |
|
| Q |
134 |
atggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaaga |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8941838 |
atggtaatgatttcggatggggaaaacctatagcag-tcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaaga |
8941927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8913561 - 8913780
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgct---agcatgtccaataataatt |
97 |
Q |
| |
|
|||||||||||| | || ||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||| | |||| || | ||||| |
|
|
| T |
8913561 |
attgcttcacacgctgacgagaagttgaagaatcattacgagtcttggttaagaaatccaagctttgttaggcttgctaagaacatggtaaaaactaatt |
8913660 |
T |
|
| Q |
98 |
tcatatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaat |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||||||||||| | |
|
|
| T |
8913661 |
tcatatccattagtagttctccatagtttgatgtttatggtaat-------gatggggaaagcctgtggcagttcgtagtggatataaaataaatggact |
8913753 |
T |
|
| Q |
198 |
tgtaaatgtatttgctggaatagaaga |
224 |
Q |
| |
|
| | | ||||||| ||||||||||| |
|
|
| T |
8913754 |
tattacagtatttgtcggaatagaaga |
8913780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8936069 - 8936283
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagctttgttagggttgctagcatgtccaataataatttca |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| | || || ||||||| |
|
|
| T |
8936069 |
attgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaagcttt---ag------taacatgccaaaaaagaatttca |
8936159 |
T |
|
| Q |
101 |
tatccattagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgt |
200 |
Q |
| |
|
|| ||||||| |||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||| |||| ||||||||||| ||||||| || | |
|
|
| T |
8936160 |
tagccattagcagttctccgtggtttgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttat |
8936259 |
T |
|
| Q |
201 |
aaatgtatttgctggaatagaaga |
224 |
Q |
| |
|
| |||||||| ||||||||||| |
|
|
| T |
8936260 |
tacagtatttgccggaatagaaga |
8936283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 8919086 - 8919184
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatgagtcttggtt---aagaaatccaagctttgttagggttgctagcatgtccaataataat |
96 |
Q |
| |
|
|||||||||||||| |||||||| |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
8919086 |
attgcttcacacactaatgagaagctgaaaaatcactatgagtcttggttaagaagaaatccagactttgttagggttgctagcatgaccaataataat |
8919184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 8938845 - 8938884
Alignment:
| Q |
1 |
attgcttcacacacggatgagaagttgaagaatcactatg |
40 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8938845 |
attgcttcacacacggatgagaagttgaagaatcactatg |
8938884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 121 - 224
Target Start/End: Original strand, 40147453 - 40147556
Alignment:
| Q |
121 |
tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||| | |||||||| |||||| ||||||||| |||||| | | |||||||||||||| || |
|
|
| T |
40147453 |
tggtttgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaag |
40147552 |
T |
|
| Q |
221 |
aaga |
224 |
Q |
| |
|
|||| |
|
|
| T |
40147553 |
aaga |
40147556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 121 - 224
Target Start/End: Complemental strand, 8102486 - 8102383
Alignment:
| Q |
121 |
tggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatag |
220 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||||||||| | |||||||| |||||| ||||| || |||| | | ||||||||||||||||| |
|
|
| T |
8102486 |
tggtttgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatag |
8102387 |
T |
|
| Q |
221 |
aaga |
224 |
Q |
| |
|
|||| |
|
|
| T |
8102386 |
aaga |
8102383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 6500539 - 6500429
Alignment:
| Q |
112 |
agttctccatggtttgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttg |
211 |
Q |
| |
|
||||| || ||||||||| |||||||||||||||| |||||||| ||||| | ||| |||| |||| | |||||||| |||| || || | |||||||| |
|
|
| T |
6500539 |
agttccccgtggtttgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttg |
6500440 |
T |
|
| Q |
212 |
ctggaatagaa |
222 |
Q |
| |
|
|||||| |||| |
|
|
| T |
6500439 |
ctggaaaagaa |
6500429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 162
Target Start/End: Complemental strand, 4501 - 4452
Alignment:
| Q |
113 |
gttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct |
162 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
4501 |
gttctccttggtttgatgtttatggtaatgattttggttggggaaaacct |
4452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 15745016 - 15745070
Alignment:
| Q |
108 |
tagtagttctccatggtttgatgtttatggtaatgatttcggatggggaaaacct |
162 |
Q |
| |
|
||||||||| || ||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
15745016 |
tagtagttcaccctggtttgatgtttatggcaatgattttggttggggaaaacct |
15745070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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