View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_31 (Length: 240)
Name: NF4731_low_31
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_31 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 231
Target Start/End: Original strand, 41383100 - 41383306
Alignment:
| Q |
17 |
gtcttcactttgttttttcatccctgaatttcctctttctgctgcactatctgattttccttcaatctatttgaactagaacaataaattaaaagagnnn |
116 |
Q |
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| T |
41383100 |
gtcttcactttgtttttccatccctgaatttcctctttct--------atctggttttccttcaatctatttgaactagaacaataaattaaaagagttg |
41383191 |
T |
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| Q |
117 |
nnnnncatatatacatacataataaaaatctatttgatcttattatagcaatatcctcgtagtagttatattagaataatattctcatagtttctctcaa |
216 |
Q |
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| T |
41383192 |
tttttcatatatacatacacaataaaaatctatttgatcttattatagcaatatcctcgtagtagttatattagaataatattctcatagtttctctcaa |
41383291 |
T |
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| Q |
217 |
atgaaataaacccta |
231 |
Q |
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| T |
41383292 |
atgaaataaacccta |
41383306 |
T |
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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 207
Target Start/End: Complemental strand, 8040743 - 8040691
Alignment:
| Q |
155 |
cttattatagcaatatcctcgtagtagttatattagaataatattctcatagt |
207 |
Q |
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| T |
8040743 |
cttattatagcaatatcctcgtagtagttatattagaataatattctcatagt |
8040691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 7973297 - 7973333
Alignment:
| Q |
149 |
tttgatcttattatagcaatatcctcgtagtagttat |
185 |
Q |
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| T |
7973297 |
tttgatcttgttatagaaatatcctcgtagtagttat |
7973333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 4065 - 4159
Alignment:
| Q |
15 |
cagtcttcactttgttttttcatccctgaatttcctctttctgctgcactatctgattttccttcaatctatttgaactagaacaataaattaaa |
109 |
Q |
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| T |
4065 |
cagtcttcaatttgtttctccctccctgattttcctatttccgttgcgctctctaagtttccttcaatctatttcaacgagaacattaaattaaa |
4159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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