View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_35 (Length: 237)
Name: NF4731_low_35
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 34746833 - 34746628
Alignment:
| Q |
9 |
agtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaattgggatttttgtttgtaaacttctcagtattaatccagaat |
108 |
Q |
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| T |
34746833 |
agtgtagcatctgctgatattactttatataataagaacaagaagagtccgcaagaaattgggatttttgtttgtaaacttctcagtattaatccagaat |
34746734 |
T |
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| Q |
109 |
gtctaaagctgtctgtacatggttgcatttcgcaggtatg-nnnnnnnacttttcttgcttcactatgtttgtgcatgattgcatttcgcaggcatattt |
207 |
Q |
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| T |
34746733 |
gtctaaagctgtctgtacatggttgcatttcgcaggtatgttttttttacttttcttgcttcactatgtttg--------tgcatttcgcaagcatattt |
34746642 |
T |
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| Q |
208 |
tcaatgcatatatt |
221 |
Q |
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| T |
34746641 |
tcaatgcatatatt |
34746628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 34751451 - 34751336
Alignment:
| Q |
1 |
aggcacacagtgtagcatctgccgatattactctatataataagaacaagaagagtccgcaagaaattgggatttttgtttgtaaacttctcagtattaa |
100 |
Q |
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| T |
34751451 |
aggcacatagtgtagcatttgctgatattgctctatatgatgataatgagaagagtctgcaagaaattgggatttttgtttgtaaacttcttagtattaa |
34751352 |
T |
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| Q |
101 |
tccagaatgtctaaag |
116 |
Q |
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| T |
34751351 |
tccagaaagtctaaag |
34751336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 119
Target Start/End: Complemental strand, 34759218 - 34759163
Alignment:
| Q |
64 |
aaattgggatttttgtttgtaaacttctcagtattaatccagaatgtctaaagctg |
119 |
Q |
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| T |
34759218 |
aaattgggatttttgttactaaacttctctgcattaatccagaaactctaaagctg |
34759163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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