View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_7 (Length: 413)
Name: NF4731_low_7
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 49693989 - 49693589
Alignment:
| Q |
1 |
aagagatagttcggatttggatgaagatgtcgaagagttgatgtcagttcgccttgagcagttcagggaacaaatttcagctctctcgactcttttgggt |
100 |
Q |
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| T |
49693989 |
aagagatagttcggatttggatgaagatgtcgaagagttgatgtcagttcgccttgagcagttcagggaacaaatttcagctctctcgactcttttgggt |
49693890 |
T |
|
| Q |
101 |
tcaataggttctggaaagaactgtcatcaagaacaaacaataacaagtccacatggaagaatgaacttagcaaaggatgatgtgagaagtcaattaatat |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49693889 |
tcaataggttctggaaagaactgtcatcaagaagaaacagtaacaagtccacatggaagaatgaacttagcaaaggatgatgtgagaagtcaattaatat |
49693790 |
T |
|
| Q |
201 |
attttgatagtgtaggtgaatcagattgcaatagagttacagtcacttatgctgatcaatctgatgttcttttcctcaaaggtccagctagtttgagttc |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49693789 |
attttgatagtgtaggtgaatcagattgcaacagagttacagtcacttatgctgatcaatctgatgttcttttcctcaaaggtccagctagtttgagttc |
49693690 |
T |
|
| Q |
301 |
cttacca---ggtgatgctcaagtttggttccaacacaacataagtgaaaatgaaaaggaaaaaatacacgagatacagaccatgagtgtcgaattcttg |
397 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49693689 |
cttaccaggtggtgatgctcaagtttggttccaacacaacataagtgaaaatgaaaaggaaaaaatacacgagatacagaccatgagtgtcgaattcttg |
49693590 |
T |
|
| Q |
398 |
a |
398 |
Q |
| |
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| |
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| T |
49693589 |
a |
49693589 |
T |
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