View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_8 (Length: 402)
Name: NF4731_low_8
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_8 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 201 - 402
Target Start/End: Original strand, 26521113 - 26521315
Alignment:
| Q |
201 |
gagggtgacgatgtgatatgtgcgtagaggtttattgtaacgtgctctccaagtatgtaaatttgataaagctataannnnnnnnnnnnnnnnnnnnn-a |
299 |
Q |
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| T |
26521113 |
gagggtgacgatgtgatatgtgcgtagaggtttattgtaacgtgctctccaagtatgtaaatttgataaagctataattttatttatagtatttttttta |
26521212 |
T |
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| Q |
300 |
taagatattaaattaaattacgaaatcaaacaagaaaaactcaccctcttttaccatcttttggtgtaagttttaaattaggaggaaaagcatagaagaa |
399 |
Q |
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| T |
26521213 |
taagatattaaattaaattacgaaatcaaacaagaaaaactcaccctcttttaccatcttttagtgtaagttttaaattaggaggaaaagcatcgaagaa |
26521312 |
T |
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| Q |
400 |
aat |
402 |
Q |
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||| |
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| T |
26521313 |
aat |
26521315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 26520915 - 26521048
Alignment:
| Q |
3 |
aggagcagcacagaggtcgaggacagcgcatgaggattcgaggaaatggaactttgaattgagttgaatgagtttccatgatgctctacagcggtaaccg |
102 |
Q |
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| T |
26520915 |
aggagcagcgcagaggttgaggacagcgcatgaggattcgaggaaatggaactttgaattgagttgaatgagtttccatgatgctctacagcggtaaccg |
26521014 |
T |
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| Q |
103 |
tgttctttggctaagaagtagaatttgtctaaac |
136 |
Q |
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| T |
26521015 |
tgttctttggctaagaagtagaatttgtgtaaac |
26521048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 3 - 136
Target Start/End: Original strand, 30378375 - 30378508
Alignment:
| Q |
3 |
aggagcagcacagaggtcgaggacagcgcatgaggattcgaggaaatggaactttgaattgagttgaatgagtttccatgatgctctacagcggtaaccg |
102 |
Q |
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|||||| || ||||| ||||| || | || ||||||||||||||||||||| || ||||||| ||||| ||||||||||||||| | | | | ||||||| |
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| T |
30378375 |
aggagcggcgcagagatcgagaacggagcgtgaggattcgaggaaatggaatttggaattgatttgaacgagtttccatgatgcacgagaacagtaaccg |
30378474 |
T |
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| Q |
103 |
tgttctttggctaagaagtagaatttgtctaaac |
136 |
Q |
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| T |
30378475 |
tgttctttggctaagtagtagtatttgtctaaac |
30378508 |
T |
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