View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4731_low_9 (Length: 401)
Name: NF4731_low_9
Description: NF4731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4731_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 235685 - 235421
Alignment:
| Q |
8 |
gacatcatcacacccgaagacagagaaacaataagaccaccatcctcactcgatggccatgtcgtcagccacttcaatcctaaaaaagtggtcgctgtca |
107 |
Q |
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| T |
235685 |
gacatcatcacacccgaagacagagaaacaataagaccaccgtcctcacccgatggccatgtcgtcagccacttcaatcctaaaatagtggtcgctgtca |
235586 |
T |
|
| Q |
108 |
tgtcccatggaaaaaa-ccctatcattgtcggctcattgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
206 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
235585 |
tgtcccatggaaaaaaaccctatcattgtcggctcgttgaactgtactggagaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattc |
235486 |
T |
|
| Q |
207 |
ctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaa |
271 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
235485 |
ctggaatgtcggcctatttaggagacatccgtgttttcaaaggccagccttatgtggttgataaa |
235421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 114 - 387
Target Start/End: Original strand, 8814023 - 8814299
Alignment:
| Q |
114 |
atggaaaaaaccctatcattgtcggctcattgaactgtactggagaagaacca---gtagtgttgaaatgtggcgatgagaattggaaacttattcctgg |
210 |
Q |
| |
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| T |
8814023 |
atggaaataaacctatcatcgtcgcctcatttaactgtaaaggagaagaacaactggtagtgttcaaatgcggcgatgagaattggaagtttattcctga |
8814122 |
T |
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| Q |
211 |
aatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtggttgataaaactgggcggactgttactgtttgtcctgatgattccact |
310 |
Q |
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|||||| | ||| || ||||| || |||| ||||||||| ||| ||||||||| || |||||||| | ||||||||||||| | || ||||| || ||| |
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| T |
8814123 |
aatgtcagtctactttggagatatccgtgctttcaaaggtcagtgttatgtggtagacaaaactggacagactgttactgttggaccggatgactcaact |
8814222 |
T |
|
| Q |
311 |
gtccggttagttgctgtatctttggttgggggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
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|| | |||||| |||| ||||||| ||| || ||||||||||||||| ||||||||||| | |||||||||||||| |
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| T |
8814223 |
gttcagttagtggctgaatctttgcttgctggcggggatattaaattcctagtggagagcaagggtgatttgttgtt |
8814299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 157 - 387
Target Start/End: Complemental strand, 247267 - 247034
Alignment:
| Q |
157 |
agaagaaccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagcct |
256 |
Q |
| |
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|||| |||||| | |||||||||| || |||||||||||||| ||| ||| ||||||| ||||||||||||||| ||||||||||||||| ||| |
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| T |
247267 |
agaacaaccagcattgttgaaatgcggtgatgagaattggaaggctatacctcacatgtcggtttatttaggagacatttgtgttttcaaaggccgacct |
247168 |
T |
|
| Q |
257 |
tatgtggttgataaaactgggcggactgttactgtttgtcctga---tgattccactgtccggttagttgctgtatctttggttgggggtggggatatta |
353 |
Q |
| |
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|||| ||| || |||||||| |||| ||| || | || || |||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
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| T |
247167 |
tatgcggtagacaaaactggatggacagttggatttggaccggaggatgattccactgtccggttagttgctgaatctttggttggtggtggagatatta |
247068 |
T |
|
| Q |
354 |
aattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
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||||||||||||||||| | |||||||||||||| |
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| T |
247067 |
aattcttagtggagagcaagggtgatttgttgtt |
247034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 164 - 387
Target Start/End: Original strand, 251114 - 251343
Alignment:
| Q |
164 |
ccagtagtgttgaaatgtggcgatgagaattggaaacttattcctggaatgtcggcctatttaggagacattcgtgttttcaaaggccagccttatgtgg |
263 |
Q |
| |
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||||||||||| ||||| || |||||||||||||| ||| ||| |||||||| ||||| ||||||||| ||||||||||||||| ||||||| || |
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| T |
251114 |
ccagtagtgttcaaatgcggtgatgagaattggaaggctatacctaacatgtcggcttattttggagacatttgtgttttcaaaggccgaccttatgcgg |
251213 |
T |
|
| Q |
264 |
ttgataaaactgggcggactgttactgttt------gtcctgatgattccactgtccggttagttgctgtatctttggttgggggtggggatattaaatt |
357 |
Q |
| |
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| || || ||||| ||||| ||||||||| | ||||| ||||||||||||| |||||| ||| |||||||||||| ||||| ||||||||||| |
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| T |
251214 |
tagacaatactggacggacagttactgttgaacttggacctgaggattccactgtccagttagtggctcaatctttggttggtggtggagatattaaatt |
251313 |
T |
|
| Q |
358 |
cttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
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||| |||||||||||| ||||||||||||| |
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| T |
251314 |
cttggtggagagcgacagtgatttgttgtt |
251343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 352 - 387
Target Start/End: Complemental strand, 235424 - 235389
Alignment:
| Q |
352 |
taaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
235424 |
taaattcttagtggagagcgacggtgatttgttgtt |
235389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 9171054 - 9170984
Alignment:
| Q |
317 |
ttagttgctgtatctttggttgggggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
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|||||||||| | |||||||||| |||||| | || |||||||||||||||||||| || ||||||||||| |
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| T |
9171054 |
ttagttgctgaacctttggttggtggtgggaacatgaaattcttagtggagagcgagggagatttgttgtt |
9170984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 317 - 387
Target Start/End: Original strand, 9159374 - 9159444
Alignment:
| Q |
317 |
ttagttgctgtatctttggttgggggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
|
||||| |||| | |||||||||| |||||| | || |||||||||||||||||||| || ||||||||||| |
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| T |
9159374 |
ttagtggctgaacctttggttggtggtgggaacataaaattcttagtggagagcgagggagatttgttgtt |
9159444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 353 - 387
Target Start/End: Original strand, 212987 - 213021
Alignment:
| Q |
353 |
aaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| |
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| T |
212987 |
aaattcttagtggagagcgagggtgatttgttgtt |
213021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 7013072 - 7013002
Alignment:
| Q |
317 |
ttagttgctgtatctttggttgggggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
|
||||| |||| | |||||||||| || ||||| || |||||||||||||||||||| | ||||||||||| |
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| T |
7013072 |
ttagtggctgaacctttggttggtggcggggacatgaaattcttagtggagagcgaggaggatttgttgtt |
7013002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 387
Target Start/End: Complemental strand, 7026008 - 7025938
Alignment:
| Q |
317 |
ttagttgctgtatctttggttgggggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
|
||||| |||| | ||||| |||| || ||||| || |||||||||||||||||||| || ||||||||||| |
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|
| T |
7026008 |
ttagtggctgaacctttgattggcggcggggacatgaaattcttagtggagagcgagggggatttgttgtt |
7025938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 7030052 - 7029995
Alignment:
| Q |
330 |
ctttggttgggggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
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|||||||||| ||||| || | |||||||||||||||||||| || ||||||||||| |
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|
| T |
7030052 |
ctttggttggtggtggaaatgtgaaattcttagtggagagcgagggggatttgttgtt |
7029995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 33541907 - 33541825
Alignment:
| Q |
305 |
tccactgtccggttagttgctgtatctttggttgggggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
|
|||||||| | |||||| |||| |||||||||||| ||||| || | |||||||||||||||||| | |||||||||||||| |
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| T |
33541907 |
tccactgttcagttagtggctgaatctttggttggtggtggagacgtcaaattcttagtggagagcaagggtgatttgttgtt |
33541825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 240 - 387
Target Start/End: Original strand, 9494619 - 9494769
Alignment:
| Q |
240 |
ttttcaaaggccagccttatgtggttgataaaactgggcggactgttactgtttgtcctgatgattccactgtccggttagttgctgtatctttggtt-- |
337 |
Q |
| |
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|||||||||| | |||||||||||| | |||||||| ||||| | |||| || | | ||||| | |||| || |||||| |||| |||||||||| |
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| T |
9494619 |
ttttcaaagggcggccttatgtggtacacaaaactggacggacagctactcttggactggatgacttcactttcgagttagtggctgaatctttggtttc |
9494718 |
T |
|
| Q |
338 |
-gggggtggggatattaaattcttagtggagagcgacggtgatttgttgtt |
387 |
Q |
| |
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|| || ||||| || ||||||||||| ||||| ||||||||||||||||| |
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| T |
9494719 |
tggtgggggggacatcaaattcttagtcgagagtgacggtgatttgttgtt |
9494769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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