View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_high_12 (Length: 346)
Name: NF4732_high_12
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 333
Target Start/End: Complemental strand, 42959216 - 42958897
Alignment:
| Q |
14 |
gagataggtccaatttctttactatgacgaaagacataaagcagggagattcaatctctccttatccttttgtcatgtgtatagataggctttccaattt |
113 |
Q |
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| T |
42959216 |
gagataggtccaatttctttactatgaccaaagacataaaggagggagattcaatctctccttatccttttgtcgtgtgtatagataggctttccaattt |
42959117 |
T |
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| Q |
114 |
aataccggaggttgtgtcaaaacggtgagcaaaaggtgttgagagctcgtataaatagaacattagtgtcacgtctcatgtttgtcaatgattttattat |
213 |
Q |
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| T |
42959116 |
aataccggaggttgtgtcaaaacggtgagcaaaaggtgttgagagctcgtaaaaatagaacgttagtgtcacgtctcatgtttgtcaatgattttattat |
42959017 |
T |
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| Q |
214 |
tatttggtcaagctactgaagatcaaatacaatgtgtggtggaaattatacaaagnnnnnnnnnttgttccatgtctatgcaaaaagggaacaatgagaa |
313 |
Q |
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| T |
42959016 |
tatttggtcaacctattgaagatcaaatacaatgtgtggtggaaattatacaaagaaaaaaaaattgttccatgtctatgcaagaagggaacaatgagaa |
42958917 |
T |
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| Q |
314 |
gaattgtatgttgtttgtga |
333 |
Q |
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| T |
42958916 |
aaattgtatgttgtttgtga |
42958897 |
T |
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