View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_high_21 (Length: 248)
Name: NF4732_high_21
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_high_21 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 248
Target Start/End: Complemental strand, 36410773 - 36410531
Alignment:
| Q |
6 |
aaattattcttaatcttgtttgttatgttgtattggttggtttgttatgcagtcaaagtctgtttgacattatagcagcgggaaggtttggtttattcga |
105 |
Q |
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| T |
36410773 |
aaattcttcttaatcttgtttgttatgttgtattggttggtttgttatgcagtcaaagtctgtttgacattatagcagcgggaaggtttggtttattcga |
36410674 |
T |
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| Q |
106 |
ttttaaacattctgcactggtctttagtggagtatgctacccagagttttgggttatagtttatataagattttgaacagagaactttttatcatgctgg |
205 |
Q |
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| T |
36410673 |
ttttaaacattctgcactggtctttagtggagtatgctacccagagttttgggttatagtttatataagattttgaacagagaactttttatcatgctgg |
36410574 |
T |
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| Q |
206 |
agaagtctcgtctgatcctacatatgtagctccttcttttcat |
248 |
Q |
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| T |
36410573 |
agaagtctcgtctgatcctacatatgtagctccttcttttcat |
36410531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 52095240 - 52095011
Alignment:
| Q |
6 |
aaattattcttaatcttgtttgttatgttgtattggttggtttgttatgcagtcaaagtctgttt-gacattatagcagcgggaaggtttggtttattcg |
104 |
Q |
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| T |
52095240 |
aaattcttcttaatcttgtctgttatgttgtattggttggtt----aagcagtca--gtctgttttgacattataacagcggtaaggtttggtttatccg |
52095147 |
T |
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| Q |
105 |
attttaaacattctgcactggtctttagtggagtatgctacccagagttttgggttatagtttatataa-----gattttgaacagagaactttttatca |
199 |
Q |
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| T |
52095146 |
attttaaacattctgcactggtttttagtggagtatgctacccagagttttgggttatagtttctataagatacgattttgaa------------tatca |
52095059 |
T |
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| Q |
200 |
tgctggagaagtctcgtctgatcctacatatgtagctccttcttttca |
247 |
Q |
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| T |
52095058 |
tgctggagaagtctcatctgatcctacatcggtagctccttcttttca |
52095011 |
T |
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