View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_high_24 (Length: 241)
Name: NF4732_high_24
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_high_24 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 20654956 - 20654709
Alignment:
| Q |
3 |
ggcgagctacggcgcataaagaggggaagatgacagttgaggaggttccgtacaagtgattgctagtctgggttctcttgtaaagtgcatcttccgtgca |
102 |
Q |
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| T |
20654956 |
ggcgagcgacggcgcaaaaagaggggaagatgacagttgaggaggttccgtacaagtgattgctagtctgggttctcttgtaaagtgcatcttccgtgca |
20654857 |
T |
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| Q |
103 |
tc---------gtcaaattatcaaacacttcatacgcaacacaatgacagtcaaattaggcaaaaaattgcagaacagagtcaaatttcatttagtaaaa |
193 |
Q |
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| T |
20654856 |
tcttctcttgagtcaaattatcaaacacttcatacgcaacacaatgacattcaaattaggcaaaaaattgaaaaacatagtcaaatttcatttagtaaaa |
20654757 |
T |
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| Q |
194 |
tcatcaaacacttcatactcaacacaataacaccttaagcaagcatca |
241 |
Q |
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| T |
20654756 |
tcatcaaacacttcatactcaacacaataacaccttaagcaagcatca |
20654709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 12037996 - 12038249
Alignment:
| Q |
1 |
acggcgagctacggcgcataaagaggggaagatgacagttgaggaggttcc----gtacaagtgattgctagtctgggttctcttgtaaagtgcatcttc |
96 |
Q |
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| T |
12037996 |
acggcgagggacggcgcacaaagaggggaagatgacagttgatgaggttccttccgtacgagtggttgctagtctgggttctcttgtaaagtgcatcttc |
12038095 |
T |
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| Q |
97 |
cgtgcatc---------gtcaaattatcaaacacttcatacgcaacacaatgacagtcaaattaggcaaaaaattgcagaacagagtcaaatttcattta |
187 |
Q |
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| T |
12038096 |
cttgcatcttctcttgagtcaaattatcaaacacttcatacgcaacacaatgacagtcaaattaggcaaaaaattgcaaaacagagtcaaatttcattta |
12038195 |
T |
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| Q |
188 |
gtaaaatcatcaaacacttcatactcaacacaataacaccttaagcaagcatca |
241 |
Q |
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| T |
12038196 |
gtaaaatcatcaaacacttcatactcaacacaataacaccttaagcaagtatca |
12038249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 106 - 227
Target Start/End: Complemental strand, 6346048 - 6345925
Alignment:
| Q |
106 |
tcaaattatcaaacacttcatacgcaacacaatg--acagtcaaattaggcaaaaaattgcagaacagagtcaaatttcatttagtaaaatcatcaaaca |
203 |
Q |
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| T |
6346048 |
tcaaattatcaaacacttcataggcaacacaatgttaaagtcaaattaggcaaacaattgcgaaacagagtcaaattttattgagtaaaatcatcaaaca |
6345949 |
T |
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| Q |
204 |
cttcatactcaacacaataacacc |
227 |
Q |
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| T |
6345948 |
cttcaaacccaatacaataacacc |
6345925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 162
Target Start/End: Complemental strand, 23241052 - 23240995
Alignment:
| Q |
105 |
gtcaaattatcaaacacttcatacgcaacacaatgacagtcaaattaggcaaaaaatt |
162 |
Q |
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| T |
23241052 |
gtcaaattatcaaacacttcatatgcaacacaatgacagtcaaattagacaaacaatt |
23240995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 23241070 - 23241019
Alignment:
| Q |
170 |
agagtcaaatttcatttagtaaaatcatcaaacacttcatactcaacacaat |
221 |
Q |
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| T |
23241070 |
agagtcaaatttcattgagtcaaattatcaaacacttcatatgcaacacaat |
23241019 |
T |
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