View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_high_3 (Length: 546)
Name: NF4732_high_3
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 17 - 537
Target Start/End: Original strand, 35703016 - 35703552
Alignment:
| Q |
17 |
tacattctattggcatctcctactatcctagcaggttagacacctcaattccttttatcatttcaagcttttgcaaccatgcagatcttctgctgtatgt |
116 |
Q |
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| T |
35703016 |
tacattctattggcatctcctactatcctagcaggttagacacctcaattccttttatcatttgaagcttttgcaaccatgcaggtcttctgctctatgt |
35703115 |
T |
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| Q |
117 |
aattgtttggtcgcacaaaaacaagaa-----------gaagaattatggtgccttaa-----tttaatttaattttgtaaatgtaaactcaactaaggt |
200 |
Q |
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| T |
35703116 |
aattgtttggttgcacaaaaataagaaatctaaagtgagaagaattctggtgccttaatttaatttaatttaattttgtaaatgtaaactcaactaaggt |
35703215 |
T |
|
| Q |
201 |
gtatgaagcaggtgtagtgagctcttccatttagcgatttaactacttgtgcattgaaaactacttatgcttttcagatactgggctttggcggtaccaa |
300 |
Q |
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| T |
35703216 |
gtatgaagcaggtgtagtgagctcttccatttagcgatttaactacttgtgcattgaaaactacttatgcttttcagatactgggctttggcggtaccaa |
35703315 |
T |
|
| Q |
301 |
cttatctgatggtgaccattgtattaatgttggtattctacattggccttaacttcatgtcaacaccttctcctgcatccataaacacagtttatggtga |
400 |
Q |
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| T |
35703316 |
cttatctgatggtgaccattgtattaatgttggtattctacattggccttaacttcatgtcaacaccttctcctgcatccataaacacagtttatggtga |
35703415 |
T |
|
| Q |
401 |
gtttagtgcagaattttttaccagtgtgggtgtggttaattttgattcctggatttttccttcctaagctttttgcacatgtgaataatttatttattta |
500 |
Q |
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| T |
35703416 |
gtttagtgcagaattttttagcagtgtgggtgtgcttaattttgattcctagatttttccttcctaagctttttacacatgtgaataatttatttattta |
35703515 |
T |
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| Q |
501 |
tctgcatgaaaaacttgtgtttgagtcctcttcatct |
537 |
Q |
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| T |
35703516 |
tctgcatgaaaaacttgtgttcgagtccttttcatct |
35703552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 258 - 447
Target Start/End: Original strand, 7957002 - 7957191
Alignment:
| Q |
258 |
aaactacttatgcttttcagatactgggctttggcggtaccaacttatctgatggtgaccattgtattaatgttggtattctacattggccttaacttca |
357 |
Q |
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| T |
7957002 |
aaactacttatgcttttcagatactgggctttggcagtaccaacttatgtgatggtgaccattgtattaatgttggcattctacattggccttaacttca |
7957101 |
T |
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| Q |
358 |
tgtcaacaccttctcctgcatccataaacacagtttatggtgagtttagtgcagaattttttaccagtgtgggtgtggttaattttgatt |
447 |
Q |
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| T |
7957102 |
tgtcaacaccatctcctgcatccttaaacgcagtttttggtgagtttaatacataatattttagcaatgcgggtgtggttaattttgatt |
7957191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 7956755 - 7956881
Alignment:
| Q |
17 |
tacattctattggcatctcctactatcctagcaggttagacacctcaattccttttatcatttcaagcttttgcaaccatgcagatcttctgctgtatgt |
116 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||| || ||| |||||||| |
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| T |
7956755 |
tacattctattggcatttcctactatcctagcaggttagacacctcaattcctgctatcatttgaagctttatcaaccatgcaggtcctctactgtatgt |
7956854 |
T |
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| Q |
117 |
aattgtttggtcgcacaaaaacaagaa |
143 |
Q |
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| T |
7956855 |
aattgtttggtgtcacaaaaacaagaa |
7956881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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