View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_high_31 (Length: 215)
Name: NF4732_high_31
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_high_31 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 31621230 - 31621370
Alignment:
| Q |
55 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---acc |
151 |
Q |
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| T |
31621230 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactacc |
31621329 |
T |
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| Q |
152 |
acaactctcttctctgtttcctccccagaatggatacttga |
192 |
Q |
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| T |
31621330 |
acaacgctcttctctgttatttccccagaatggatacttga |
31621370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 31636225 - 31636365
Alignment:
| Q |
55 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---acc |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
31636225 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactacc |
31636324 |
T |
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| Q |
152 |
acaactctcttctctgtttcctccccagaatggatacttga |
192 |
Q |
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| T |
31636325 |
acaacgctcttctctgttatttccccagaatggatacttga |
31636365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 31616499 - 31616575
Alignment:
| Q |
70 |
gaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
146 |
Q |
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| T |
31616499 |
gaatacggtatttggcgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa |
31616575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 31606570 - 31606704
Alignment:
| Q |
66 |
tcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatc---agaaacaccacaactctct- |
161 |
Q |
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| T |
31606570 |
tcaagaatgcggtatttgacgtcgttgatatttatctttggaacactttcttcgcatgtaagatccatattaggatcggaagaaacaccaccacaatatt |
31606669 |
T |
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| Q |
162 |
--tctctgtttcctccccagaatggatacttgatg |
194 |
Q |
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| T |
31606670 |
tatctctattttctccccagaatggatacttgatg |
31606704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 31610389 - 31610529
Alignment:
| Q |
55 |
tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggat---cagaaacacc |
151 |
Q |
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| T |
31610389 |
tattgtcccattcaagaatacggtatttgaccaaattaattgttatcttagggacacttccttcgcatacgagctccatcttaggatcaccagaaacacc |
31610488 |
T |
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| Q |
152 |
acaactctcttctctgtttcctccccagaatggatacttga |
192 |
Q |
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|||| || ||||||||||||||||||| | |||||||||| |
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| T |
31610489 |
acaatacttttctctgtttcctccccagtacggatacttga |
31610529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 31597365 - 31597496
Alignment:
| Q |
56 |
attgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacaccacaa |
155 |
Q |
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| T |
31597365 |
attgttccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttccttcgcatgtaagcttcatattaggatcggaaacaccacaa |
31597464 |
T |
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| Q |
156 |
ctctcttctctgtttcctccccagaatggata |
187 |
Q |
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| T |
31597465 |
taatttcctctattttctccccagaatggata |
31597496 |
T |
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