View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_high_5 (Length: 477)
Name: NF4732_high_5
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 463
Target Start/End: Original strand, 25947812 - 25948255
Alignment:
| Q |
19 |
caaagaattggtccaggaaataaaatagcatacaagttgaatgtaagcatcaataaaagagattttatatatcatctactattatctctttttcactatt |
118 |
Q |
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| T |
25947812 |
caaagaattggtccaggaaataaaatagcatacaagttgaatgtaagcatcaataaaagagattttatacatcatctactattatctctttttcactatt |
25947911 |
T |
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| Q |
119 |
aataataatgctttatcttttcatctttcagcatggcgagcttgtcgagaaagaaaactggctgccaaagggtccattgaagattggtgtaacatcaggt |
218 |
Q |
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| T |
25947912 |
aataataatgctttatcttttcatctttcagcatggcgagcttgtcgagaaagaaaactggctgccaaagggtccattgaagattggtgtaacatcaggt |
25948011 |
T |
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| Q |
219 |
gcatccacaccagacaaggtattttctcttaccttgcgcgtgaagcaataaaaacttgtgactggccttccatattcttgttaannnnnnncagtatatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
25948012 |
gcatccacaccagacaaggtattttctcttaccttgcgcgtgaagtaataaaaacttgtgactggccttccatattcttgtt-atttttttcagtatatt |
25948110 |
T |
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| Q |
319 |
ctgctggtgtaattaatatactttggaaaccaacatgttgttgcaattcagatagttactttcacaggaagtaactggtgcaaatggcttgtgtcgtatt |
418 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25948111 |
ctgctggtgtaatgaatatactttggaaaccaacatgttgttgcaattcagatagttactttcagaggaagtaactggtgcaaatggcttgtgtcgtatt |
25948210 |
T |
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| Q |
419 |
tatttaaatttcaaatattgttccttcctttcagttttcaatgat |
463 |
Q |
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| T |
25948211 |
tatttaaatttcaaatattgttccttcctttcagttttcgatgat |
25948255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 105 - 273
Target Start/End: Original strand, 25926199 - 25926367
Alignment:
| Q |
105 |
tctttttcactattaataataatgctttatcttttcatctttcagcatggcgagcttgtcgagaaagaaaactggctgccaaagggtccattgaagattg |
204 |
Q |
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|||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||| | ||||| |
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| T |
25926199 |
tctttttcaccagtaataataatgttttatcttttcatctttcagcatggcgagcttgtggagaaagaaaactttctaccaaagggtccattaaggattg |
25926298 |
T |
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| Q |
205 |
gtgtaacatcaggtgcatccacaccagacaaggtattttctcttaccttgcgcgtgaagcaataaaaac |
273 |
Q |
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| T |
25926299 |
gtgtaacatctggtgcatccacacctgacaaggtattttctcttgccttgcatgtgaatctataaaaac |
25926367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 25926086 - 25926150
Alignment:
| Q |
19 |
caaagaattggtccaggaaataaaatagcatacaagttgaatgtaagcatcaataaaagagattt |
83 |
Q |
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| T |
25926086 |
caaagaattggcccaggaaacagaatagcatacaagttgaatgtaagcatcgataaaagagattt |
25926150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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