View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4732_high_7 (Length: 423)

Name: NF4732_high_7
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4732_high_7
NF4732_high_7
[»] chr6 (3 HSPs)
chr6 (13-405)||(20654214-20654609)
chr6 (13-405)||(12038349-12038726)
chr6 (20-157)||(6345671-6345807)
[»] chr3 (10 HSPs)
chr3 (220-348)||(4185434-4185563)
chr3 (214-348)||(4188580-4188715)
chr3 (177-265)||(4185232-4185324)
chr3 (186-273)||(34014083-34014174)
chr3 (214-288)||(34011151-34011226)
chr3 (356-405)||(34013935-34013984)
chr3 (287-330)||(20632771-20632814)
chr3 (356-405)||(4185622-4185671)
chr3 (309-348)||(34014029-34014068)
chr3 (316-348)||(34014177-34014209)
[»] chr8 (5 HSPs)
chr8 (177-348)||(3378719-3378894)
chr8 (177-348)||(38618296-38618471)
chr8 (177-348)||(38613894-38614069)
chr8 (349-405)||(3378625-3378681)
chr8 (356-405)||(38614114-38614163)
[»] chr4 (3 HSPs)
chr4 (177-288)||(19340977-19341092)
chr4 (177-348)||(19336466-19336641)
chr4 (356-405)||(19336686-19336735)
[»] scaffold0210 (2 HSPs)
scaffold0210 (185-344)||(9694-9857)
scaffold0210 (312-348)||(9733-9769)
[»] chr5 (1 HSPs)
chr5 (287-330)||(21541914-21541957)


Alignment Details
Target: chr6 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 13 - 405
Target Start/End: Complemental strand, 20654609 - 20654214
Alignment:
Q  13 catcaacaagcatcaatgaaggtgaatcacattaccaagattagaaaaccagatgaaatcttcgcaaatcaccatgaacgcaatatgaatggagaaaata 112  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20654609 catcaacaagcatcaatgaaggtgaatcacattaccaaggttagaaaaccagatgaaatcttcgcaaatcaccatgaacgcaatatgaatggagaaaata 20654510  T
Q  113 ttcattgaaaccacaaaccctaagatgagaattgagggataatcatcgcagagaaccctgtaagaatgtaattccctgattataattgatgac---aatt 209  Q
    || | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    ||||    
T  20654509 ttaactgaaaccacaaaccctaagatgagaattgagggataatcatcgcagaaaaccctgtaagaatgtaattccctgattataattgatgatgagaatt 20654410  T
Q  210 atacatatacaattgtttctgattctaatatagaaactaataatgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20654409 atacatatacaattgtttctgattctaatatagaaactaataatgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaa 20654310  T
Q  310 ataataatgcctaatgaatatacaataaaaataattgataatgttcaggctgtcacggaaatcttggaacaatatcaagggaagaccagttgtgaa 405  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20654309 ataataatgtctaatgaatatacaataaacataattgataatgtttaggctgtcacggaaatcttggaacaatatcaagggaagaccagttgtgaa 20654214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 405
Target Start/End: Original strand, 12038349 - 12038726
Alignment:
Q  13 catcaacaagcatcaatgaaggtgaatcacattaccaagattagaaaaccagatgaaatcttcgcaaatcaccatgaacgcaatatgaatggagaaaata 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||||||||||||||    
T  12038349 catcaacaagcatcaatgaaggtgaatcacattaccaagattagaaaaccagatgaaatcttcgcaaat---------------atgaatggagaaaata 12038433  T
Q  113 ttcattgaaaccacaaaccctaagatgagaattgagggataatcatcgcagagaaccctgtaagaatgtaattccctgattataattgatgacaattata 212  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  12038434 ttcattgaaaccacaaaccctaagatgcgaattgagggataatcatcgcagagaaccctgtaagaatgtaattccctgatcataattgatgagaattata 12038533  T
Q  213 catatacaattgtttctgattctaatatagaaactaataatgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaata 312  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12038534 aatatacaattgtttctgattctaatatagaaactaataatgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaata 12038633  T
Q  313 ataatgcctaatgaatatacaataaaaataattgataatgttcaggctgtcacggaaatcttggaacaatatcaagggaagaccagttgtgaa 405  Q
    |||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  12038634 ataaggcctaatgaatatacaataaacataattgataatgttgaggctgtcacggaaatcttggaacaatatcaagggaagacttgttgtgaa 12038726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 20 - 157
Target Start/End: Complemental strand, 6345807 - 6345671
Alignment:
Q  20 aagcatcaatgaaggtgaatcacattaccaagattagaaaaccagatgaaatcttcgcaaatcaccatgaacgcaatatgaatggagaaaatattcattg 119  Q
    ||||||||||||||||||||||||||||| ||||||| |||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||    
T  6345807 aagcatcaatgaaggtgaatcacattaccgagattagtaaac-agatgaaattttcgcaaatcacgatgaacgcaatatgaatggagaaaatattctttg 6345709  T
Q  120 aaaccacaaaccctaagatgagaattgagggataatca 157  Q
    | ||||  ||||||||||||||||||  ||||||||||    
T  6345708 ataccattaaccctaagatgagaattaggggataatca 6345671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 6e-41; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 220 - 348
Target Start/End: Original strand, 4185434 - 4185563
Alignment:
Q  220 aattgtttctgattctaatatagaaactaataa-tgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaataataatg 318  Q
    |||||||||||||||| |||||||||||||||| ||| |||||||||| |||||||| ||| |||||||||||||||||||||||||| ||||| |||||    
T  4185434 aattgtttctgattctgatatagaaactaataaatgcataatgaatatacaataatgtctaatcaatataattacatatttgacaagtaaaatagtaatg 4185533  T
Q  319 cctaatgaatatacaataaaaataattgat 348  Q
     ||||||||||||||||||| |||||||||    
T  4185534 tctaatgaatatacaataaacataattgat 4185563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 214 - 348
Target Start/End: Original strand, 4188580 - 4188715
Alignment:
Q  214 atatacaattgtttctgattctaatatagaaactaataa-tgcctaatgaatattcaataatgcctattcaatataattacatatttgacaagtcaaata 312  Q
    |||||||||| ||||||||||| |||||||||||||||| |||||||||||||| ||| |||| ||| |||||||||||||||||||||||||| |||||    
T  4188580 atatacaattatttctgattctgatatagaaactaataaatgcctaatgaatatacaaaaatgtctaatcaatataattacatatttgacaagtaaaata 4188679  T
Q  313 ataatgcctaatgaatatacaataaaaataattgat 348  Q
     ||||| ||||| ||||| ||||||| |||| ||||    
T  4188680 gtaatgtctaataaatattcaataaatataactgat 4188715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 177 - 265
Target Start/End: Original strand, 4185232 - 4185324
Alignment:
Q  177 aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaata 265  Q
    |||||||| |||||||||| |||||||| ||||   ||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||    
T  4185232 aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaataaatgcataatgaata 4185324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 186 - 273
Target Start/End: Complemental strand, 34014174 - 34014083
Alignment:
Q  186 ccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaataa 273  Q
    |||||||||| |||||||| ||||   ||| |||||||||||||||||||||| |||||||||||||| ||||| |||| ||||| ||||||    
T  34014174 ccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcttaatcaatatacaataa 34014083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 214 - 288
Target Start/End: Complemental strand, 34011226 - 34011151
Alignment:
Q  214 atatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaataatgcctattcaatata 288  Q
    ||||| |||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||| ||| | ||||||    
T  34011226 atatataattgtttctgattctgatatagaaactaatgaatacctaatgaatatacaataatgtctaataaatata 34011151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Complemental strand, 34013984 - 34013935
Alignment:
Q  356 aggctgtcacggaaatcttggaacaatatcaagggaagaccagttgtgaa 405  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  34013984 aggctgtcacggaaatcttggaataatatcaagggaagaccttttgtgaa 34013935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 20632771 - 20632814
Alignment:
Q  287 taattacatatttgacaagtcaaataataatgcctaatgaatat 330  Q
    ||||||||||||||||||||||| |||||||| |||||||||||    
T  20632771 taattacatatttgacaagtcaactaataatgtctaatgaatat 20632814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 4185622 - 4185671
Alignment:
Q  356 aggctgtcacggaaatcttggaacaatatcaagggaagaccagttgtgaa 405  Q
    ||||||||||| ||||||||||| |||||||||||||||||  |||||||    
T  4185622 aggctgtcacgaaaatcttggaataatatcaagggaagaccttttgtgaa 4185671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 34014068 - 34014029
Alignment:
Q  309 aataataatgcctaatgaatatacaataaaaataattgat 348  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  34014068 aatagtaatgcctaatgaatatacaataaacataattgat 34014029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 348
Target Start/End: Original strand, 34014177 - 34014209
Alignment:
Q  316 atgcctaatgaatatacaataaaaataattgat 348  Q
    ||||||||||||||||||||||| |||||||||    
T  34014177 atgcctaatgaatatacaataaacataattgat 34014209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 348
Target Start/End: Complemental strand, 3378894 - 3378719
Alignment:
Q  177 aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata 272  Q
    |||||||| |||||||||| |||||||| ||||   ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||    
T  3378894 aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaata 3378795  T
Q  273 atgcctattcaatat--aat-tacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataattgat 348  Q
    ||||||| |||||||  |||  ||||| |||   | || |||| ||||||||||||||||||||||||| |||||||||    
T  3378794 atgcctaatcaatatacaataaacataattg---attctaatagtaatgcctaatgaatatacaataaacataattgat 3378719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 177 - 348
Target Start/End: Original strand, 38618296 - 38618471
Alignment:
Q  177 aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata 272  Q
    |||||||| |||||||||| |||||||| ||||   ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||    
T  38618296 aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaata 38618395  T
Q  273 atgcctattcaatat--aat-tacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataattgat 348  Q
    ||||||| |||||||  |||  ||||| |||   | || |||| ||||||||||||||||||||||||| |||||||||    
T  38618396 atgcctaatcaatatacaataaacataattg---attctaatagtaatgcctaatgaatatacaataaacataattgat 38618471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 177 - 348
Target Start/End: Original strand, 38613894 - 38614069
Alignment:
Q  177 aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata 272  Q
    |||||||| ||| |||||| |||||||| ||||   ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||    
T  38613894 aatgtaatcccccgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaata 38613993  T
Q  273 atgcctattcaatat--aat-tacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataattgat 348  Q
    ||||||| | |||||  |||  ||||| |||   | || |||| ||||| ||||||||||||||||||| |||||||||    
T  38613994 atgcctaatgaatatacaataaacataattg---attctaatagtaatgtctaatgaatatacaataaacataattgat 38614069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 405
Target Start/End: Complemental strand, 3378681 - 3378625
Alignment:
Q  349 aatgttcaggctgtcacggaaatcttggaacaatatcaagggaagaccagttgtgaa 405  Q
    |||||| || |||||||||||||||||||| |||||||||||||||||  |||||||    
T  3378681 aatgttgagtctgtcacggaaatcttggaataatatcaagggaagaccttttgtgaa 3378625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 38614114 - 38614163
Alignment:
Q  356 aggctgtcacggaaatcttggaacaatatcaagggaagaccagttgtgaa 405  Q
    ||||||||||||||||||||||| |||||||| ||||||||  |||||||    
T  38614114 aggctgtcacggaaatcttggaataatatcaaaggaagaccttttgtgaa 38614163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 177 - 288
Target Start/End: Original strand, 19340977 - 19341092
Alignment:
Q  177 aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata 272  Q
    |||||||| |||||||||| |||||||| ||||   ||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||    
T  19340977 aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaata 19341076  T
Q  273 atgcctattcaatata 288  Q
    || |||| ||||||||    
T  19341077 atacctaatcaatata 19341092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 177 - 348
Target Start/End: Original strand, 19336466 - 19336641
Alignment:
Q  177 aatgtaattccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaata 272  Q
    |||||||| |||||||||| |||||||| ||||   ||| |||||||||||||||||||||| |||||||||||||| || ||||||| ||||| |||||    
T  19336466 aatgtaatcccctgattattattgatgagaattgtgatagatatacaattgtttctgattctgatatagaaactaatgaaggcctaataaatatacaata 19336565  T
Q  273 atgcctattcaatata-attacatat--ttgacaagtcaaataataatgcctaatgaatatacaataaaaataattgat 348  Q
    || |||| |||||||| | || ||||  |||   | || |||| ||||| ||||||||||||||||||| |||||||||    
T  19336566 atacctaatcaatatacaataaatataattg---attctaatagtaatgtctaatgaatatacaataaacataattgat 19336641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 356 - 405
Target Start/End: Original strand, 19336686 - 19336735
Alignment:
Q  356 aggctgtcacggaaatcttggaacaatatcaagggaagaccagttgtgaa 405  Q
    ||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  19336686 aggctgtcacggaaatcttggaataatatcaagggaagaccttttgtgaa 19336735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 185 - 344
Target Start/End: Complemental strand, 9857 - 9694
Alignment:
Q  185 tccctgattataattgatgacaatt---atacatatacaattgtttctgattctaatatagaaactaat-aatgcctaatgaatattcaataatgcctat 280  Q
    ||||||||||| |||||||| ||||   |||  ||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||     
T  9857 tccctgattattattgatgagaattgtgataggtatacaattgtttctgattctgatatagaaactaatgaatgcctaatgaatatacaataatgcctaa 9758  T
Q  281 tcaatat--aat-tacatatttgacaagtcaaataataatgcctaatgaatatacaataaaaataat 344  Q
    |||||||  |||  ||||| |||   | || |||| ||||||||||||||||||||||||| |||||    
T  9757 tcaatatacaataaacataattg---attctaatagtaatgcctaatgaatatacaataaacataat 9694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 348
Target Start/End: Complemental strand, 9769 - 9733
Alignment:
Q  312 aataatgcctaatgaatatacaataaaaataattgat 348  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  9769 aataatgcctaatcaatatacaataaacataattgat 9733  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 21541957 - 21541914
Alignment:
Q  287 taattacatatttgacaagtcaaataataatgcctaatgaatat 330  Q
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T  21541957 taattacatatttgacaagtcaactaataatgtctaatgaatat 21541914  T

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