View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_16 (Length: 326)
Name: NF4732_low_16
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 6 - 308
Target Start/End: Complemental strand, 35684853 - 35684551
Alignment:
| Q |
6 |
cttcccgcatcactaaacccattaaaggaatgatcggtaaactcaaccttgtatcccatgattctagcatgcataagggcctcatgacaaagtgttgaaa |
105 |
Q |
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| T |
35684853 |
cttccagcatcactaaaaccattcaaggaatgatcggtaaacacaaccttgtatcccatgattctagcatgcataagggcctcatgacaaagtgttgaaa |
35684754 |
T |
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| Q |
106 |
aggtttgatgtccatgcgcaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaatgtgttctgattaaa |
205 |
Q |
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| T |
35684753 |
aggtttgatgtccatgcacaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaatgtgttctgattaaa |
35684654 |
T |
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| Q |
206 |
gaatggtctccatggaacatagtagatttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaaccaccacctgatca |
305 |
Q |
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| T |
35684653 |
gaatggtctccatggaacatagtagacttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaaccaccacctgatca |
35684554 |
T |
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| Q |
306 |
ttg |
308 |
Q |
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||| |
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| T |
35684553 |
ttg |
35684551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 92 - 308
Target Start/End: Complemental strand, 20685601 - 20685385
Alignment:
| Q |
92 |
acaaagtgttgaaaaggtttgatgtccatgcgcaacggtaattctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaat |
191 |
Q |
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| T |
20685601 |
acaaagtgttgaaaaggtttgatgtccatgcacaacggtaattctttctcgagtgaaaatagttcttataattgggagtgttccatataaagttggaaat |
20685502 |
T |
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| Q |
192 |
gtgttctgattaaagaatggtctccatggaacatagtagatttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaa |
291 |
Q |
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| T |
20685501 |
gtattcatattaaagaatggtctccgtggaacatggtacactttcaaaccatccgtcatgtgtctaaccccagagcattttccataagcatgggttacaa |
20685402 |
T |
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| Q |
292 |
ccaccacctgatcattg |
308 |
Q |
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| T |
20685401 |
ccaccacctgatcattg |
20685385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 33 - 302
Target Start/End: Original strand, 40672316 - 40672585
Alignment:
| Q |
33 |
gaatgatcggtaaactcaaccttgtatcccatgattctagcatgcataagggcctcatgacaaagtgttgaaaaggtttgatgtccatgcgcaacggtaa |
132 |
Q |
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| T |
40672316 |
gaatgatctgtaaacacaaccttgtatcccatggttcttgcatgcatgagagtttcatgacaaaatgtcgaaaaggcttggtgtccatgcaccactgtaa |
40672415 |
T |
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| Q |
133 |
ttctttctcgagtgagaatagttcttataattgggagtgttccatgcaaagttggaaatgtgttctgattaaagaatggtctccatggaacatagtagat |
232 |
Q |
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| T |
40672416 |
ttctttctcgaataagaatcgttcttataattggtaataacccatagatggttggaaacgtattctgcataacaaatggtctccatggaacatagtatac |
40672515 |
T |
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| Q |
233 |
ttttaaaccacctgtcatgtatctaaccccagagcgttttccataagcatgagttacaaccaccacctga |
302 |
Q |
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| T |
40672516 |
tttcagaccaccagtcatatatctgaccccagatcgatttccataagcatgagttgcaaccaccacctga |
40672585 |
T |
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