View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_17 (Length: 292)
Name: NF4732_low_17
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 274
Target Start/End: Original strand, 24845874 - 24846132
Alignment:
| Q |
14 |
gagaaagacctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctattgagaactctcctcccattggagcatac |
113 |
Q |
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| T |
24845874 |
gagaaagacctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctattgagaactctcctcccattggagcatac |
24845973 |
T |
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| Q |
114 |
catagtcgaattgctctaacaacaccaatgtctactccgtgataatcttcgaaaccataaaggcttgcatttgcaatgttgcataagtcggataatgatc |
213 |
Q |
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| T |
24845974 |
catagtcgaattgctctaacgacaccaatgtctactccgtgataatcttcgaaaccataaaggcttgcatttgcaatgttgcataagtcggataatgatc |
24846073 |
T |
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| Q |
214 |
ctgcatttaccgtggaagaagccgtctctccagatatctgtcacacagataaaagccaaac |
274 |
Q |
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| T |
24846074 |
ctgcatttaccgtggaagaagccgtctctccagatatctgt--cacagataaaagacaaac |
24846132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 19 - 260
Target Start/End: Complemental strand, 42044113 - 42043872
Alignment:
| Q |
19 |
agacctcttctgtacgactaatggcaaagccgagctttgtatcttcctctctaagtttgatctctattgagaactctcctcccattggagcataccatag |
118 |
Q |
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|||||||||| |||||||||||||| || || || |||| |||||| ||| | ||||||||||| || || | ||||||||| | |||||||||||||| |
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| T |
42044113 |
agacctcttcggtacgactaatggcgaatccaagttttgaatcttcttcttttagtttgatctcaatagaaagctctcctccaactggagcataccataa |
42044014 |
T |
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| Q |
119 |
tcgaattgctctaacaacaccaatgtctactccgtgataatcttcgaaaccataaaggcttgcatttgcaatgttgcataagtcggataatgatcctgca |
218 |
Q |
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| T |
42044013 |
acgaactgctcgaacaacacctatgtctattccatggtaatcctcaaagccataaaggcttacatttgctaggttagataagtcagacagagaacctgca |
42043914 |
T |
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| Q |
219 |
tttaccgtggaagaagccgtctctccagatatctgtcacaca |
260 |
Q |
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| T |
42043913 |
ttcacagtagcagaagctgtctccccagatatctgtcacaca |
42043872 |
T |
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