View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_19 (Length: 288)
Name: NF4732_low_19
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 17 - 267
Target Start/End: Original strand, 39580310 - 39580560
Alignment:
| Q |
17 |
atgaagcctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataa |
116 |
Q |
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| T |
39580310 |
atgaagcctgaggtaatgatcaatattcttttccacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttggcacttttataa |
39580409 |
T |
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| Q |
117 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttat |
216 |
Q |
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| T |
39580410 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtttaatatcacctccaaagaaaccattcttagcgttat |
39580509 |
T |
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| Q |
217 |
gtggattagtgatgtaactgtcatctggtagccactttcttgataagctat |
267 |
Q |
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| T |
39580510 |
gtggattagtgatgtaactgtcatctggtaaccactttcttgataagctat |
39580560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 39543918 - 39544147
Alignment:
| Q |
17 |
atgaagcctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataa |
116 |
Q |
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| T |
39543918 |
atgaagcctaaggaaatgatcaatactcttttcaacaggaacactccaacttatgtttaaacctttagaaccgcttttgctctctttggcagtttcataa |
39544017 |
T |
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| Q |
117 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttat |
216 |
Q |
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| T |
39544018 |
acagcgtccggagcaatatatatatttgaatttggaccttcatatgtattatttgcagtgcgtttaatttcatctgcaaaggaaccattcttagcgtttt |
39544117 |
T |
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| Q |
217 |
gtggattagtgatgtaactgtcatctggta |
246 |
Q |
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| T |
39544118 |
gtggattagttatataactgtcatctggta |
39544147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 39510879 - 39511121
Alignment:
| Q |
17 |
atgaagcctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataa |
116 |
Q |
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||||||||||||| ||||||| | | | ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| |||| | |||||| |
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| T |
39510879 |
atgaagcctgaggaaatgatctacagttttttgcacaggaacactccaacttatgtttaaaccttttgaaccgtttgcactctcttggccagttttataa |
39510978 |
T |
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| Q |
117 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttat |
216 |
Q |
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| | ||||||||||||| |||| |||||||||||||||||||||||||| ||||| | || |||||||| |||||| ||||| |||| || || | |
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| T |
39510979 |
acaatatctggaccaatatatatacttgaatttggaccatcagattcatcatttgcagcgtgtttaatatca---ccaaaggaaccaatcttcgcatttt |
39511075 |
T |
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| Q |
217 |
gtggattagtgatgtaactgtcatctggtagccactttcttgataa |
262 |
Q |
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|||||||||| ||||| ||||||||| ||| ||| | ||||||||| |
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| T |
39511076 |
gtggattagttatgtatctgtcatctcgtaaccattctcttgataa |
39511121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 39524622 - 39524866
Alignment:
| Q |
17 |
atgaagcctgaggtaatgatcaatattcttttgcacaggaacactccaacttatgtttaaaccgtttgaaccatttttactctctttgccactattataa |
116 |
Q |
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|
||||||| | ||| ||||||| |||||||| | ||||||||||||||||||||||||||||||| |||||||||| |||| ||||| || | |||||| |
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| T |
39524622 |
atgaagcataaggaaatgatctatattcttctccacaggaacactccaacttatgtttaaaccgattgaaccattaacactcactttggcagttttataa |
39524721 |
T |
|
| Q |
117 |
agagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttat |
216 |
Q |
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| | |||||||| || | | |||||||||||| | || ||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||| | |
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| T |
39524722 |
acaatatctggacctatgtatttatttgaatttgaatcaacagattcatcatttgcagtgcgtttaatatcaccttcaaaggaaccattcttagcgtttt |
39524821 |
T |
|
| Q |
217 |
gtggattagtgatgtaactgtcatctggtagccactttcttgata |
261 |
Q |
| |
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| |||| ||| || || ||||||||||||| ||| | |||||||| |
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| T |
39524822 |
ggggatcagttatatatctgtcatctggtaaccattctcttgata |
39524866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 246
Target Start/End: Original strand, 39575841 - 39575993
Alignment:
| Q |
94 |
tactctctttgccactattataaagagcgtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctcc |
193 |
Q |
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|||||||||||||| | ||||||| | |||||| |||||| | ||||||||||||||||||||| |||| |||||||||| ||||||||| | |
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| T |
39575841 |
tactctctttgccagttttataaacaatatctggagcaatatattgatttgaatttggaccatcagacgtatcatttgcagtgcgtggaatatcaccgtc |
39575940 |
T |
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| Q |
194 |
aaagtaaccattcttagcgttatgtggattagtgatgtaactgtcatctggta |
246 |
Q |
| |
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|||| | | |||||||||||| ||| ||||||| | || ||||||||||||| |
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| T |
39575941 |
aaaggagcaattcttagcgttttgtagattagttacatatctgtcatctggta |
39575993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 39521227 - 39521348
Alignment:
| Q |
122 |
gtctggaccaatatgtatatttgaatttggaccatcagattcatcacctgcagtgcgtataatatcacctccaaagtaaccattcttagcgttatgtgga |
221 |
Q |
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||||||| |||||| | |||||||||||||||||||||| |||| |||||||||| ||||| | | ||||| | | |||||||||||| |||||| |
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| T |
39521227 |
gtctggagcaatatattgatttgaatttggaccatcagatgtatcatttgcagtgcgtggaatatgaacgtcaaaggagcgattcttagcgttttgtgga |
39521326 |
T |
|
| Q |
222 |
ttagtgatgtaactgtcatctg |
243 |
Q |
| |
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||||| | ||||||||||||| |
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| T |
39521327 |
ttagttacataactgtcatctg |
39521348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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