View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_20 (Length: 287)
Name: NF4732_low_20
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 45160694 - 45160440
Alignment:
| Q |
18 |
cacagaaaagtaaagaatgaaatagcnnnnnnnntagtagttcatttaccaaaatactctttnnnnnnntaagaatagagaaactaacagtttgtgatat |
117 |
Q |
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| T |
45160694 |
cacagaaaagtaaagaatgaaatag-taaaaaaatagtagttcatttaccaaaatactctttaaaaaaataagaatagagaaactaacagtttgtgatat |
45160596 |
T |
|
| Q |
118 |
ttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttctttggtgttatcctgtgaatatcaagta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45160595 |
ttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttcttttgtgttatcctgtgaatatcaagta |
45160496 |
T |
|
| Q |
218 |
tcaacaaaaggaaattattacaaatggtaaatatgtaataaatagtagaatttttt |
273 |
Q |
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| T |
45160495 |
tcaacaaaaggaaattattataaatggtaaatatgtaataaatagcagaatttttt |
45160440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 58 - 240
Target Start/End: Original strand, 24127611 - 24127792
Alignment:
| Q |
58 |
ttcatttaccaaaatactctttnnnnnnntaagaatagagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaatt |
157 |
Q |
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| T |
24127611 |
ttcatttaccaaaatactctttaaaaaa-taaaaatagagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcagagtggaatt |
24127709 |
T |
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| Q |
158 |
acctcgcttaaaataaggtaacccaaaacttctttggtgttatcctgtgaatatcaagtatcaacaaaaggaaattattacaa |
240 |
Q |
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| T |
24127710 |
atctcacttaaaataaggtaacccaagacttctttggtgttaacctgtgaatatcaagtatcaacaaaaggaaattattacaa |
24127792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 8716656 - 8716779
Alignment:
| Q |
114 |
atatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttctttggtgttatcctgtgaatatca |
213 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||| | ||||||||| | |
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| T |
8716656 |
atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggtaatctaagacttctttggtgttgacgtgtgaatataa |
8716755 |
T |
|
| Q |
214 |
agtatcaacaaaaggaaattatta |
237 |
Q |
| |
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|||| ||||||||| ||||||||| |
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| T |
8716756 |
agtaacaacaaaagaaaattatta |
8716779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 8722967 - 8723114
Alignment:
| Q |
91 |
aatagagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttct |
190 |
Q |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||| ||| ||| ||||||||||||| ||||||||| |
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| T |
8722967 |
aatagagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggtaacctaaaacttct |
8723066 |
T |
|
| Q |
191 |
ttggtgttatcctgtgaatatcaagtatcaacaaaaggaaattattac |
238 |
Q |
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|||||| | | || |||| | ||||| |||||||||||||||||||| |
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| T |
8723067 |
ttggtgctgacttgcgaatctaaagtaacaacaaaaggaaattattac |
8723114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 9068543 - 9068666
Alignment:
| Q |
114 |
atatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttctttggtgttatcctgtgaatatca |
213 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||| | ||||||||| | |
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| T |
9068543 |
atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggtaatctaagacttctttggtgttgacgtgtgaatataa |
9068642 |
T |
|
| Q |
214 |
agtatcaacaaaaggaaattatta |
237 |
Q |
| |
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|||| ||||||||| ||||||||| |
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| T |
9068643 |
agtaacaacaaaagaaaattatta |
9068666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 238
Target Start/End: Original strand, 9074854 - 9075001
Alignment:
| Q |
91 |
aatagagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttct |
190 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||| |||||||||||| ||| ||||||||||| ||| ||| ||||||||||||| ||||||||| |
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| T |
9074854 |
aatagagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggtaacctaaaacttct |
9074953 |
T |
|
| Q |
191 |
ttggtgttatcctgtgaatatcaagtatcaacaaaaggaaattattac |
238 |
Q |
| |
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|||||| | | || |||| | ||||| |||||||||||||||||||| |
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| T |
9074954 |
ttggtgctgacttgcgaatctaaagtaacaacaaaaggaaattattac |
9075001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 195
Target Start/End: Original strand, 16335714 - 16335818
Alignment:
| Q |
91 |
aatagagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggtaacccaaaacttct |
190 |
Q |
| |
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|||||| || |||||| ||| | ||| ||| |||||||| ||| | ||||||| ||| |||||||||| ||| ||| ||| |||| |||| | ||||||| |
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| T |
16335714 |
aatagaaaagctaacaatttttaataattcttttccgatttccttcttgctcatgcataatggaattatctcacttgaaagaaggaaacctataacttct |
16335813 |
T |
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| Q |
191 |
ttggt |
195 |
Q |
| |
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||||| |
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| T |
16335814 |
ttggt |
16335818 |
T |
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