View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_23 (Length: 256)
Name: NF4732_low_23
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_23 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 35685070 - 35684834
Alignment:
| Q |
20 |
aacaataacaatttcggatctactaggtttagaactacggcgctcctcctccgacattggcttaaacttggcagtgtcaacagcattaggtattacaaaa |
119 |
Q |
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| T |
35685070 |
aacaataacaatttcggatctactaggtttagaactacggcgctcctcctccgacattggcttaaacttggcagtgtcaacagcattaggtattacaaaa |
35684971 |
T |
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| Q |
120 |
accttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactcacatctgccaaggtaaactgcaaaa |
219 |
Q |
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| T |
35684970 |
accttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactcacatctgccaaggtaaactgcaaaa |
35684871 |
T |
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| Q |
220 |
ccttgttcatgtgtatacttccagcatcactaaaacc |
256 |
Q |
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| T |
35684870 |
ccttgttcatgtgtatacttccagcatcactaaaacc |
35684834 |
T |
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Back To:
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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 248
Target Start/End: Original strand, 40672148 - 40672300
Alignment:
| Q |
96 |
tcaacagcattaggtattacaaaaaccttctccggcgccaaacccgacctcaaaaccgtgttctccttacttgtatgagaaacacatatagcctgactca |
195 |
Q |
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||||| |||||||||||||||||||| || || || | |||||| |||| || || ||||| ||||| ||||| |||||||||||||| || ||| ||| |
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| T |
40672148 |
tcaacggcattaggtattacaaaaactttatctggtggcaaacctgaccgtaacactgtgttttccttgcttgtgtgagaaacacatatggcttgagtca |
40672247 |
T |
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| Q |
196 |
catctgccaaggtaaactgcaaaaccttgttcatgtgtatacttccagcatca |
248 |
Q |
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| T |
40672248 |
catctgccaaggtaaactgcaacaccttgttcatgtgaatgcttccagcatca |
40672300 |
T |
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