View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4732_low_25 (Length: 245)
Name: NF4732_low_25
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_25 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 21939879 - 21939650
Alignment:
| Q |
1 |
ttgctaaaggcaacaagtacaaccaaattttttagttttggaattccttttgggaattgacctgaaaaattgtttctgcttatatcgaagcttttcaagc |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
21939879 |
ttgctaaaggcatcaagtacaaccaaattttttagttttggaattccttttgggaattgacctgaaaaattgtttctgcttatatctaagcttttcaagc |
21939780 |
T |
|
| Q |
101 |
ttgtgaagttgaaaatttctggtggaagtttccctgagaagaaattatagcttatgttgaaatcaataacctttgtgaacacactgaattggttacctga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21939779 |
ttgtgaagttgaaaatttctggtggaagtttccctgagaagaaattatagcttatattgaaatcaataacctttgtgaacacactgaattggttacctga |
21939680 |
T |
|
| Q |
201 |
tagtacaccacctagtttcttcatggaaag |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21939679 |
tagtacaccacctagtttcttcatggaaag |
21939650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 10802231 - 10802453
Alignment:
| Q |
8 |
aggcaacaagtacaaccaaattttttagttttggaattccttttgggaattgacctgaaaaattgtttctgcttatatcgaagcttttcaagcttgtgaa |
107 |
Q |
| |
|
||||| ||| |||||||||| |||| ||||| | ||||||||||||||| ||||| |||||||||||| || |||||| |||||||||||| |||||| |
|
|
| T |
10802231 |
aggcatcaaatacaaccaaacttttgagtttagaaattccttttgggaactgaccggaaaaattgtttgtgtctatatctaagcttttcaagtttgtgag |
10802330 |
T |
|
| Q |
108 |
gttgaaaatttctggtggaagtttccctgagaagaaattatagcttatgttgaaatcaataacctttgtgaacacactgaattggttacctgatagtaca |
207 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||||| ||||| |||||||||||||||| |||||| ||||||| ||| ||||||||||||||| |
|
|
| T |
10802331 |
gttgaaaatttctggtggaagtttaccagagaataaattattgcttagattgaaatcaataacctctgtgaagacactgagttgcttacctgatagtaca |
10802430 |
T |
|
| Q |
208 |
ccacctagtttcttcatggaaag |
230 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
10802431 |
ccacctagtttcttcatggaaag |
10802453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University