View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_29 (Length: 237)
Name: NF4732_low_29
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 36410471 - 36410249
Alignment:
| Q |
1 |
tttctcatctgtttgtaattgttggttggttagaaattagtttgtgttggttatacataaatgtgggaagtagagtatctttgtggtggagcagaattcg |
100 |
Q |
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| T |
36410471 |
tttctcatctgtttgtaattgttggttggttagaaattagtttgtgttggttatacataaatgtgggaagtagagtatctttgtggtggagcagaattcg |
36410372 |
T |
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| Q |
101 |
ggtaggcgcatgtagagtgattgctggtgccgttacttccattacacataacgttggtgttttcaccaccaggaacaatggctttggaaacccgttgcag |
200 |
Q |
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| T |
36410371 |
ggtaggcgcatgtagagtgattgctggtgccgttactcccattacacataacgttggtgttttcgccaccaggaacaatggctttggaaacccgttgcaa |
36410272 |
T |
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| Q |
201 |
atctccttttctcagtatcaaat |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
36410271 |
atctccttttctcagtatcaaat |
36410249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 59 - 223
Target Start/End: Original strand, 36394055 - 36394218
Alignment:
| Q |
59 |
aaatgtgggaagtagagtatctttgtggtggagcagaattcgggtaggcgcatgtagagtgattgctggtgccgttacttccattacacataacgttggt |
158 |
Q |
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| T |
36394055 |
aaatgtgggaagtagaggaactttgcggtggagcagtattcgg-taggcgcatgtagtgtgatcgctggcgccactgtgtccattacacataacgttgat |
36394153 |
T |
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| Q |
159 |
gttttcaccaccaggaacaatggctttggaaacccgttgcagatctccttttctcagtatcaaat |
223 |
Q |
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| T |
36394154 |
gttttctcgagcaggaacaatggctttagacatccgttgcagatctctttttctcaataccaaat |
36394218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 52094949 - 52094897
Alignment:
| Q |
1 |
tttctcatctgtttgtaattgttggttggttagaaattagtttgtgttggtta |
53 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
52094949 |
tttctcatctgtttgtaattgttggttagttagaaattagtttgtgttagtta |
52094897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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