View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_3 (Length: 569)
Name: NF4732_low_3
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 11 - 569
Target Start/End: Original strand, 24845352 - 24845897
Alignment:
| Q |
11 |
cacagatgaagacaagggttttgattttgtactttctgcacttgaagtcgccattgttcggtcccaaaggaagacatgtaggagaataggaactttagtg |
110 |
Q |
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| T |
24845352 |
cacagatgaagacaagggttttgattttgtactttctgcacttgaagtcgccattgttcggtcccaaaggaagacatgtaggagaataggaactttagtg |
24845451 |
T |
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| Q |
111 |
tgtcgatgtaaggagagtttctggcttaatgaaacagtgtcgtaacaacgaattgctccggttgatgaaaccatccatggaagaactctttgatttgaaa |
210 |
Q |
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| T |
24845452 |
tgtcgatgtaaggagagtttctggcttaatgaaacagtgtcgtaacaacgaattgctccggttgatgaaaccatccatggaagaactctttgatttgaaa |
24845551 |
T |
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| Q |
211 |
gccttgaaactaccaataaccttgaagtttctgttgctagtttgtatagattgcttagccctgaacgtgtagctggtaaactttctttaccttcgtcgat |
310 |
Q |
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| T |
24845552 |
gccttgaaactaccaataaccttgaagtttctgttgctagtttgtatagattgcttagccctgaacgtgtagctggtaaactttctttaccttcgtcgat |
24845651 |
T |
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| Q |
311 |
taccgatgatgagatgaatataaaaccctgttgatcacaaaattattagatgaaacattcaacaataaatgagtttgtgtaacttaagcacatgtctcac |
410 |
Q |
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| T |
24845652 |
taccgatgatgagatgaatataaaaccctgttgatcacaaaattattagatgaaacattcaacaataaatgagtttgtgtaacttaagcacatgtctcac |
24845751 |
T |
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| Q |
411 |
ttcatattgatgacatgttagtatttgacacttcaaactcgatcggttctattttcttaaatcatcagtgtcagtgttgtgttaggtgtctgactatatc |
510 |
Q |
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| T |
24845752 |
ttcatattgatgacatgttagtattcgacacttcaaactcgatcggttctattttcttaaatcatcagtgtcggtgttgtgttaggtgtctggct----- |
24845846 |
T |
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| Q |
511 |
aatgtttcataacatgtacggaaaattcagagagggagaaagacctcttctgtacgact |
569 |
Q |
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| T |
24845847 |
--------ataacatgtacggaaaattcagagagggagaaagacctcttctgtacgact |
24845897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 68 - 297
Target Start/End: Complemental strand, 42044538 - 42044309
Alignment:
| Q |
68 |
tcggtcccaaaggaagacatgtaggagaataggaactttagtgtgtcgatgtaaggagagtttctggcttaatgaaacagtgtcgtaacaacgaattgct |
167 |
Q |
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| T |
42044538 |
tcggtcccaaaggaagacatggagcagaattggaactctggtgtgtctgtgcaaggatagcttctggctcaaggaaactgtgtcgtaacatcgaattgct |
42044439 |
T |
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| Q |
168 |
ccggttgatgaaaccatccatggaagaactctttgatttgaaagccttgaaactaccaataaccttgaagtttctgttgctagtttgtatagattgctta |
267 |
Q |
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| T |
42044438 |
cctgttgaagataccatccatggaagtactttttggtttgacactcttgacactaccaataatctacaagtgtctgttgccagtttataaagactgctta |
42044339 |
T |
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| Q |
268 |
gccctgaacgtgtagctggtaaactttctt |
297 |
Q |
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| T |
42044338 |
gcccagaacgagtagcaggtacattttctt |
42044309 |
T |
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