View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_30 (Length: 235)
Name: NF4732_low_30
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 220
Target Start/End: Original strand, 17209792 - 17210001
Alignment:
| Q |
12 |
tttatgtaagtctatggaaaagattaagggtcagtacaaatatgtatgcatttaattcatgttttcttggtaattattagttattaatgacgaaggttta |
111 |
Q |
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| T |
17209792 |
tttatgtaagtctatggagaatattaagggtcggtacaaacatgtatgcatttaattcatgttttcttggtaattattagttattaatgacgaaggttta |
17209891 |
T |
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| Q |
112 |
aaaactaaacacaatgcattattttctaattatgtattctgtaacctatagtttataacttgtaaatgtatcaaggtaag-aaaaaataaagagaaactt |
210 |
Q |
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| T |
17209892 |
aaaactaaacacaatgcattattttttaattatgtattctgtaacctatagtttataacttgtaaatgtatcaaggtaagaaaaaaataaagagaaactt |
17209991 |
T |
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| Q |
211 |
attgaaatat |
220 |
Q |
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| T |
17209992 |
attgaaatat |
17210001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 161
Target Start/End: Original strand, 17206505 - 17206658
Alignment:
| Q |
12 |
tttatgtaagtctatggaaaagattaagggtcagtacaaatatgtatgcatttaattcatgt---tttcttggtaattattagttattaatgacgaaggt |
108 |
Q |
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|||| ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||| ||| || ||||||||||||||||||||| | |||| |
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| T |
17206505 |
tttacgtaagtctatggagaagataaagggtcagtacaaacatgtatgcatttaattcatgtttctttttttgtaattattagttattaatgatggaggt |
17206604 |
T |
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| Q |
109 |
ttaaaaactaaacacaatgcatta-ttttctaattatgtattctgtaacctata |
161 |
Q |
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| T |
17206605 |
ttaaaaactaaatacaatgcgttatttttctaattatgtattcagtaacctata |
17206658 |
T |
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