View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4732_low_34 (Length: 215)

Name: NF4732_low_34
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4732_low_34
NF4732_low_34
[»] chr7 (6 HSPs)
chr7 (55-192)||(31621230-31621370)
chr7 (55-192)||(31636225-31636365)
chr7 (70-146)||(31616499-31616575)
chr7 (66-194)||(31606570-31606704)
chr7 (55-192)||(31610389-31610529)
chr7 (56-187)||(31597365-31597496)


Alignment Details
Target: chr7 (Bit Score: 111; Significance: 3e-56; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 31621230 - 31621370
Alignment:
Q  55 tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---acc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31621230 tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactacc 31621329  T
Q  152 acaactctcttctctgtttcctccccagaatggatacttga 192  Q
    ||||| ||||||||||||   ||||||||||||||||||||    
T  31621330 acaacgctcttctctgttatttccccagaatggatacttga 31621370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 31636225 - 31636365
Alignment:
Q  55 tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaac---acc 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||    
T  31636225 tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacactacc 31636324  T
Q  152 acaactctcttctctgtttcctccccagaatggatacttga 192  Q
    ||||| ||||||||||||   ||||||||||||||||||||    
T  31636325 acaacgctcttctctgttatttccccagaatggatacttga 31636365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 31616499 - 31616575
Alignment:
Q  70 gaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa 146  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31616499 gaatacggtatttggcgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaa 31616575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 66 - 194
Target Start/End: Original strand, 31606570 - 31606704
Alignment:
Q  66 tcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatc---agaaacaccacaactctct- 161  Q
    |||||||| |||||||||||||| |||||  ||||||||||||||||||||||||||||||| ||||||||||||||   ||||||||||| ||  | |     
T  31606570 tcaagaatgcggtatttgacgtcgttgatatttatctttggaacactttcttcgcatgtaagatccatattaggatcggaagaaacaccaccacaatatt 31606669  T
Q  162 --tctctgtttcctccccagaatggatacttgatg 194  Q
      ||||| ||| |||||||||||||||||||||||    
T  31606670 tatctctattttctccccagaatggatacttgatg 31606704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 192
Target Start/End: Original strand, 31610389 - 31610529
Alignment:
Q  55 tattgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggat---cagaaacacc 151  Q
    |||||||||||||||||||||||||||||||   ||| || |||||||| || |||||| ||||||||   |||||||| |||||||   ||||||||||    
T  31610389 tattgtcccattcaagaatacggtatttgaccaaattaattgttatcttagggacacttccttcgcatacgagctccatcttaggatcaccagaaacacc 31610488  T
Q  152 acaactctcttctctgtttcctccccagaatggatacttga 192  Q
    ||||  || ||||||||||||||||||| | ||||||||||    
T  31610489 acaatacttttctctgtttcctccccagtacggatacttga 31610529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 56 - 187
Target Start/End: Original strand, 31597365 - 31597496
Alignment:
Q  56 attgtcccattcaagaatacggtatttgacgtcattgatggttatctttggaacactttcttcgcatgtaagctccatattaggatcagaaacaccacaa 155  Q
    ||||| ||||||||||||||| ||||| |||  |||||| |||||||| || ||  || ||||||||||||||| |||||||||||| ||||||||||||    
T  31597365 attgttccattcaagaatacgatatttcacgaaattgatcgttatcttcgggacttttccttcgcatgtaagcttcatattaggatcggaaacaccacaa 31597464  T
Q  156 ctctcttctctgtttcctccccagaatggata 187  Q
       | | |||| ||| ||||||||||||||||    
T  31597465 taatttcctctattttctccccagaatggata 31597496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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