View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4732_low_5 (Length: 491)
Name: NF4732_low_5
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 60 - 467
Target Start/End: Complemental strand, 15632978 - 15632565
Alignment:
| Q |
60 |
ttcgtcgaataatccactgcgaccaccaggtagttgacttgtcccatagctttggggaatggtcccaatagatcgattccacaccaagagaacggccatg |
159 |
Q |
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| T |
15632978 |
ttcgtcgaataatccactacgaccaccaggtagttgacttgtcccatagctttggggaatggtcccgatagaccgattccacaccaagcaaacggccatg |
15632879 |
T |
|
| Q |
160 |
gtgaagcgaatgacattaactcggttggaggagctatgtgcatgtccccatgtttctggaatctgtggcattacataaacccaaaccattaccatcataa |
259 |
Q |
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| T |
15632878 |
gtgaagcgaatgatgttaactcagctggaggagctatgtgcatgtccctatgtttctggaatctgtggcattacataaacccaaaccattaccatcataa |
15632779 |
T |
|
| Q |
260 |
attagtcaaatattggataaattactagggcaatacaaaccaagctgcatatactgatataccaca------gacaggatgcccgactccgaccaatctc |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
15632778 |
attagtcaaatattggataaattactagggcaatacaaaccaagcagcatatactgatataccacagacacagacaggatgcccgactccgaccaatctc |
15632679 |
T |
|
| Q |
354 |
cctcccttgctctcatcgacgcataccctcaaataactccctctcatgctctcctcgtcctcgacaccctcttaatcaagatcttcgatgtctacttctt |
453 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15632678 |
cctcccttgctctcatcgacgcatagcctcaaataactccctctcatgctctcctcgtcctcgacaccctcttaatcaagatcttcgatgtctacttctt |
15632579 |
T |
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| Q |
454 |
tactgaagcttgta |
467 |
Q |
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| T |
15632578 |
tactggagcttgta |
15632565 |
T |
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