View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4732_low_7 (Length: 466)
Name: NF4732_low_7
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4732_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Original strand, 52122182 - 52122619
Alignment:
| Q |
19 |
tcaagctctattcagatatcagaaacagaaatttgggttcgaaaaatcatcgaaatgtacgatttttgtttttgggtctctattcaaatcacaaaccatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52122182 |
tcaagctctattcagatatcagaaacagaaatttgggttcgaaaaatcatcgaaatgtacgatttttgtttttgggtctctattcaaatcacaaaccatt |
52122281 |
T |
|
| Q |
119 |
catcaaattgttataaattttttgttttgatttcagcattcaaacaggtgattaaagaaccttcacttttgggattgaacaaatttcaaaggactcttat |
218 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52122282 |
catcaaattgttttaaattttttgttttgatttcagcattcaaacaggtgattaaagaaccttcacttttgggattgaacaaatttcaaaggactcttat |
52122381 |
T |
|
| Q |
219 |
acatgcttctgattccaccgtaaatggtgcattggaagttgaactgaaacaaagttccagtgttcctgttaatgtgggttatagtgggttggaaccattt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52122382 |
acatgcttctgattccaccgtaaatggtgcattggaagttgaactgaaacaaagttccagtgttcctgttaatgtgggttatagtgggttggaaccattt |
52122481 |
T |
|
| Q |
319 |
catggtaaatcaggttctgtctctttttatgggttgacacaccaatctgtagaagaagggaagttggtatctgctccgttcaaacaagaggagagctctt |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52122482 |
catggtaaatcaggttctgtctctttttatgggttgacacaccaatctgtagaagaagggaagttggtatctgctccgttcaaacaagaggagagctctt |
52122581 |
T |
|
| Q |
419 |
acttatgggttttggctcctgttgcattcatatcatct |
456 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52122582 |
acttatgggttttggctcctgttgcattcatatcatct |
52122619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University