View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4732_low_8 (Length: 453)

Name: NF4732_low_8
Description: NF4732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4732_low_8
NF4732_low_8
[»] chr5 (8 HSPs)
chr5 (16-443)||(35623162-35623590)
chr5 (356-404)||(43405696-43405744)
chr5 (356-404)||(4348011-4348059)
chr5 (356-406)||(27721194-27721244)
chr5 (372-404)||(4592460-4592492)
chr5 (356-404)||(14733617-14733665)
chr5 (376-404)||(19179548-19179576)
chr5 (356-400)||(43222189-43222233)
[»] chr7 (13 HSPs)
chr7 (26-105)||(29678868-29678948)
chr7 (356-408)||(11828863-11828915)
chr7 (356-404)||(47270970-47271018)
chr7 (356-404)||(40143567-40143615)
chr7 (356-408)||(46823364-46823416)
chr7 (356-404)||(47456595-47456643)
chr7 (356-407)||(25656911-25656962)
chr7 (374-404)||(27386902-27386932)
chr7 (376-404)||(7712331-7712359)
chr7 (376-404)||(18803302-18803330)
chr7 (376-404)||(27117446-27117474)
chr7 (356-400)||(40721057-40721101)
chr7 (376-404)||(44390861-44390889)
[»] chr4 (12 HSPs)
chr4 (351-404)||(26332939-26332992)
chr4 (358-408)||(3326582-3326632)
chr4 (376-414)||(9608043-9608081)
chr4 (356-394)||(25442150-25442188)
chr4 (374-408)||(28701702-28701736)
chr4 (376-404)||(4404375-4404403)
chr4 (376-404)||(10565118-10565146)
chr4 (364-404)||(17080883-17080923)
chr4 (356-408)||(31785502-31785554)
chr4 (376-404)||(48084489-48084517)
chr4 (376-404)||(54997572-54997600)
chr4 (376-404)||(56564873-56564901)
[»] chr2 (8 HSPs)
chr2 (356-408)||(12949559-12949611)
chr2 (344-404)||(2522541-2522601)
chr2 (356-406)||(45446566-45446616)
chr2 (358-406)||(2358355-2358403)
chr2 (374-404)||(373128-373158)
chr2 (356-404)||(28853112-28853160)
chr2 (376-404)||(35315585-35315613)
chr2 (376-404)||(36758825-36758853)
[»] chr1 (8 HSPs)
chr1 (358-408)||(24339324-24339374)
chr1 (357-406)||(44483830-44483879)
chr1 (360-404)||(39426044-39426088)
chr1 (356-395)||(10778062-10778101)
chr1 (356-407)||(46608340-46608391)
chr1 (356-404)||(680000-680048)
chr1 (376-404)||(10776181-10776209)
chr1 (376-404)||(27982135-27982163)
[»] chr8 (5 HSPs)
chr8 (365-406)||(11452958-11452999)
chr8 (360-408)||(10869577-10869625)
chr8 (356-414)||(44517617-44517675)
chr8 (376-404)||(11759266-11759294)
chr8 (376-404)||(20169151-20169179)
[»] scaffold0252 (1 HSPs)
scaffold0252 (358-404)||(10438-10484)
[»] scaffold0007 (1 HSPs)
scaffold0007 (375-408)||(246312-246345)
[»] scaffold0121 (1 HSPs)
scaffold0121 (376-404)||(29533-29561)
[»] chr3 (4 HSPs)
chr3 (376-404)||(3009304-3009332)
chr3 (364-408)||(41726924-41726968)
chr3 (376-404)||(51982549-51982577)
chr3 (356-404)||(52255652-52255699)


Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 443
Target Start/End: Original strand, 35623162 - 35623590
Alignment:
Q  16 accttccattgctattactaaaagccaataaaattattcttatagaaagatcaataaaattattaataagaaaatccaaacgactacacagtacagattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35623162 accttccattgctattactaaaagccaataaaattattcttatagaaagatcaataaaattattaataagaaaatccaaacgactacacagtacagattt 35623261  T
Q  116 ttataacattacgttactactaaaatgtattgaaaagaggcaatgaaatcccttnnnnnnnggcaacaagatgactatagagtacagctaaaaagaaaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||    
T  35623262 ttataacattacgttactactaaaatgtattgaaaagaggcaatgaaatcccttaaaaaaaggcaacaagatgactatagagtacagctaaaaagaaaga 35623361  T
Q  216 catttttatagagaaataaaatacatgaaataaaggcagacaactaaatgaagaaagt-nnnnnnnnncctatttctcttaacggtgttcaacgagagtt 314  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||          |||| ||||||||||  |||||||||||||||    
T  35623362 catttttgtagtaaaataaaatacatgaaataaaggcagacaactaaatgaagaaagtaaaaaaaaaacctacttctcttaacactgttcaacgagagtt 35623461  T
Q  315 aagatcatctccatttatgatatttttcatttgtgagtatctctctttctaaatgatattctccatttatttttataaatggagaggatccttaatcgtt 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35623462 aagatcatctccatttatgatatttttcatttgtgagtatctctctttctaaatgacattctccatttatttttataaatggagaggatccttaatcgtt 35623561  T
Q  415 cagcggcactcccttcaccccctctcatt 443  Q
    |||| ||||||||||||||||||||||||    
T  35623562 cagccgcactcccttcaccccctctcatt 35623590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 43405696 - 43405744
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||||||||  ||||||||||||    
T  43405696 tctctttctaaatgatattctccatttatttttattgatggagaggatc 43405744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 4348059 - 4348011
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  4348059 tctctttctaaatggcattctccatttatttttatatatggagaggatc 4348011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 406
Target Start/End: Original strand, 27721194 - 27721244
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatcct 406  Q
    |||||||||||||  |||  ||||||||||||||| |||||||||||||||    
T  27721194 tctctttctaaattgtatcttccatttatttttattaatggagaggatcct 27721244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 404
Target Start/End: Complemental strand, 4592492 - 4592460
Alignment:
Q  372 attctccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||| ||||||||    
T  4592492 attctccatttatttttataaatgaagaggatc 4592460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 14733617 - 14733665
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||||||  ||||| | ||| |||||||||||||||||||||||||||    
T  14733617 tctctttcctaatgacaatcttcatttatttttataaatggagaggatc 14733665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 19179548 - 19179576
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  19179548 tccatttatttttataaatggagaggatc 19179576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 43222189 - 43222233
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagag 400  Q
    ||||||||  ||||| | |||||||||||||||||||||||||||    
T  43222189 tctctttcataatgacaatctccatttatttttataaatggagag 43222233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 29678948 - 29678868
Alignment:
Q  26 gctattactaaaagccaataaaattattcttatagaaag-atcaataaaattattaataagaaaatccaaacgactacaca 105  Q
    |||| |||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |||||||||||||||    
T  29678948 gctactactaaaagccaataaaattattcttatagaaagaattaatataattattaataagaaaacccaaacgactacaca 29678868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 11828915 - 11828863
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatcctta 408  Q
    ||||||||||||||  |||||||||||||||||||||| ||||||||||||||    
T  11828915 tctctttctaaatggcattctccatttatttttataaacggagaggatcctta 11828863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 47271018 - 47270970
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||    
T  47271018 tctctatctaaatgacattcttcatttatttttataaatggagaggatc 47270970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 40143567 - 40143615
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    |||||||| |||| ||||  |||||||||||||||||||||||||||||    
T  40143567 tctctttccaaattatatcttccatttatttttataaatggagaggatc 40143615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 46823416 - 46823364
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatcctta 408  Q
    ||||||||||||||  | |||| ||||||||||||||||| ||||||||||||    
T  46823416 tctctttctaaatgtcaatctctatttatttttataaatgtagaggatcctta 46823364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 47456643 - 47456595
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||| ||||    
T  47456643 tctctttttaaatgacattctccatttatttttgtaaatggagatgatc 47456595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 407
Target Start/End: Original strand, 25656911 - 25656962
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatcctt 407  Q
    ||||||| |||| || | |||||||||||||||||||||||||| |||||||    
T  25656911 tctctttataaaagagaatctccatttatttttataaatggagaagatcctt 25656962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 404
Target Start/End: Complemental strand, 27386932 - 27386902
Alignment:
Q  374 tctccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||||    
T  27386932 tctccatttatttttataaatggagaggatc 27386902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 7712359 - 7712331
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  7712359 tccatttatttttataaatggagaggatc 7712331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 18803302 - 18803330
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  18803302 tccatttatttttataaatggagaggatc 18803330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 27117474 - 27117446
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  27117474 tccatttatttttataaatggagaggatc 27117446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 400
Target Start/End: Original strand, 40721057 - 40721101
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagag 400  Q
    |||||||||||||||||| ||||| ||| |||||||||| |||||    
T  40721057 tctctttctaaatgatatcctccacttaattttataaatagagag 40721101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 44390861 - 44390889
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  44390861 tccatttatttttataaatggagaggatc 44390889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 351 - 404
Target Start/End: Complemental strand, 26332992 - 26332939
Alignment:
Q  351 gtatctctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26332992 gtatatctctttctaaatgacattctccatttatttttataaatggagaggatc 26332939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 408
Target Start/End: Original strand, 3326582 - 3326632
Alignment:
Q  358 tctttctaaatgatattctccatttatttttataaatggagaggatcctta 408  Q
    |||||||||||| ||| || | |||||||| ||||||||||||||||||||    
T  3326582 tctttctaaatggtatccttcgtttattttcataaatggagaggatcctta 3326632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 414
Target Start/End: Original strand, 9608043 - 9608081
Alignment:
Q  376 tccatttatttttataaatggagaggatccttaatcgtt 414  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  9608043 tccatttatttttataaatggagaggatctttaaccgtt 9608081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 25442188 - 25442150
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaat 394  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  25442188 tctctttctaaatgacatactccatttatttttataaat 25442150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 408
Target Start/End: Complemental strand, 28701736 - 28701702
Alignment:
Q  374 tctccatttatttttataaatggagaggatcctta 408  Q
    ||||||||| |||||||||||||||||||||||||    
T  28701736 tctccatttgtttttataaatggagaggatcctta 28701702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 4404375 - 4404403
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  4404375 tccatttatttttataaatggagaggatc 4404403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 10565146 - 10565118
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  10565146 tccatttatttttataaatggagaggatc 10565118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 404
Target Start/End: Original strand, 17080883 - 17080923
Alignment:
Q  364 taaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||||| |||||||||||||||||||||||| ||| ||||    
T  17080883 taaatgacattctccatttatttttataaatgaagatgatc 17080923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 408
Target Start/End: Complemental strand, 31785554 - 31785502
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatcctta 408  Q
    ||||||| ||||||  |||||||||||||||||||||||| ||| ||| ||||    
T  31785554 tctctttttaaatgccattctccatttatttttataaatgaagatgattctta 31785502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 48084517 - 48084489
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  48084517 tccatttatttttataaatggagaggatc 48084489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 54997600 - 54997572
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  54997600 tccatttatttttataaatggagaggatc 54997572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 56564873 - 56564901
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  56564873 tccatttatttttataaatggagaggatc 56564901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 356 - 408
Target Start/End: Original strand, 12949559 - 12949611
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatcctta 408  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  12949559 tctctttctaaatggtatcctccatttatttttataaatggagaggatcctta 12949611  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 344 - 404
Target Start/End: Original strand, 2522541 - 2522601
Alignment:
Q  344 tttgtgagtatctctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    |||||| |||||||||||||||||||  || ||||||||||||||||||||| ||||||||    
T  2522541 tttgtgtgtatctctctttctaaatggcatgctccatttatttttataaatgaagaggatc 2522601  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 356 - 406
Target Start/End: Complemental strand, 45446616 - 45446566
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatcct 406  Q
    ||||||||||||||  | |||||||||||||||||||||||||||||||||    
T  45446616 tctctttctaaatggcaatctccatttatttttataaatggagaggatcct 45446566  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 406
Target Start/End: Complemental strand, 2358403 - 2358355
Alignment:
Q  358 tctttctaaatgatattctccatttatttttataaatggagaggatcct 406  Q
    ||||||||||||| ||| ||||||||||||||||||| ||||| |||||    
T  2358403 tctttctaaatgagattttccatttatttttataaatagagagtatcct 2358355  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 404
Target Start/End: Complemental strand, 373158 - 373128
Alignment:
Q  374 tctccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||||    
T  373158 tctccatttatttttataaatggagaggatc 373128  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 28853112 - 28853160
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    |||||||| ||||  ||| ||||||||||||| ||||||||||||||||    
T  28853112 tctctttccaaattgtatcctccatttattttgataaatggagaggatc 28853160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 35315585 - 35315613
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  35315585 tccatttatttttataaatggagaggatc 35315613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 36758853 - 36758825
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  36758853 tccatttatttttataaatggagaggatc 36758825  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 408
Target Start/End: Complemental strand, 24339374 - 24339324
Alignment:
Q  358 tctttctaaatgatattctccatttatttttataaatggagaggatcctta 408  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  24339374 tctttctaaataacattctccatttatttttataaatggagaggatcctta 24339324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 406
Target Start/End: Original strand, 44483830 - 44483879
Alignment:
Q  357 ctctttctaaatgatattctccatttatttttataaatggagaggatcct 406  Q
    |||||||||||||  || ||||||| ||||||||||||||||||||||||    
T  44483830 ctctttctaaatggcatcctccattaatttttataaatggagaggatcct 44483879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 39426044 - 39426088
Alignment:
Q  360 tttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||||||||| |||||| ||||||||||||||||||||| ||||    
T  39426044 tttctaaatgacattctctatttatttttataaatggagaagatc 39426088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 395
Target Start/End: Original strand, 10778062 - 10778101
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatg 395  Q
    ||||||||||||||||| ||||||||| ||||||||||||    
T  10778062 tctctttctaaatgataatctccatttgtttttataaatg 10778101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 356 - 407
Target Start/End: Complemental strand, 46608391 - 46608340
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatcctt 407  Q
    ||||||||||||||  || |||| |||||||| |||||||||||||||||||    
T  46608391 tctctttctaaatggcatcctccctttattttcataaatggagaggatcctt 46608340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Complemental strand, 680048 - 680000
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||||||||||||| ||| || ||||||||||||||||| ||| ||||    
T  680048 tctctttctaaatgacattttctatttatttttataaatgaagaagatc 680000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 10776181 - 10776209
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  10776181 tccatttatttttataaatggagaggatc 10776209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 27982135 - 27982163
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  27982135 tccatttatttttataaatggagaggatc 27982163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 365 - 406
Target Start/End: Complemental strand, 11452999 - 11452958
Alignment:
Q  365 aaatgatattctccatttatttttataaatggagaggatcct 406  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  11452999 aaatggtaatctccatttatttttataaatggagaggatcct 11452958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 360 - 408
Target Start/End: Original strand, 10869577 - 10869625
Alignment:
Q  360 tttctaaatgatattctccatttatttttataaatggagaggatcctta 408  Q
    ||||||||||| |||||| ||||| ||||||||| ||||||||||||||    
T  10869577 tttctaaatgacattctcaatttaattttataaacggagaggatcctta 10869625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 414
Target Start/End: Complemental strand, 44517675 - 44517617
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatccttaatcgtt 414  Q
    |||||||| |||| |||| ||||||||||||| ||||||||||  |||||||| |||||    
T  44517675 tctctttccaaattatatactccatttattttgataaatggaggagatccttactcgtt 44517617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 11759266 - 11759294
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  11759266 tccatttatttttataaatggagaggatc 11759294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 20169151 - 20169179
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  20169151 tccatttatttttataaatggagaggatc 20169179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 404
Target Start/End: Complemental strand, 10484 - 10438
Alignment:
Q  358 tctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||| |||||  ||||||||||||||||| ||||||||||||||||    
T  10484 tctttttaaattgtattctccatttattttgataaatggagaggatc 10438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 246312 - 246345
Alignment:
Q  375 ctccatttatttttataaatggagaggatcctta 408  Q
    ||||||||||||| ||||||||||||||||||||    
T  246312 ctccatttattttgataaatggagaggatcctta 246345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 29561 - 29533
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  29561 tccatttatttttataaatggagaggatc 29533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Original strand, 3009304 - 3009332
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  3009304 tccatttatttttataaatggagaggatc 3009332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Complemental strand, 41726968 - 41726924
Alignment:
Q  364 taaatgatattctccatttatttttataaatggagaggatcctta 408  Q
    ||||||| | ||| ||||||||||||||| |||||||||||||||    
T  41726968 taaatgacactcttcatttatttttataactggagaggatcctta 41726924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 404
Target Start/End: Complemental strand, 51982577 - 51982549
Alignment:
Q  376 tccatttatttttataaatggagaggatc 404  Q
    |||||||||||||||||||||||||||||    
T  51982577 tccatttatttttataaatggagaggatc 51982549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 356 - 404
Target Start/End: Original strand, 52255652 - 52255699
Alignment:
Q  356 tctctttctaaatgatattctccatttatttttataaatggagaggatc 404  Q
    ||||||| ||||| |||| ||| ||||||||||||||||||||||||||    
T  52255652 tctctttataaataatat-ctcaatttatttttataaatggagaggatc 52255699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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