View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4733-Insertion-1 (Length: 1080)
Name: NF4733-Insertion-1
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4733-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 673; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 673; E-Value: 0
Query Start/End: Original strand, 262 - 1067
Target Start/End: Complemental strand, 46737351 - 46736551
Alignment:
| Q |
262 |
gatgtagtgcttatatggctgagatatggggtgcgttcgtaggtttaaaattaacctatagcaaaggatataagattgagttgctcttagaagcaaaggt |
361 |
Q |
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| T |
46737351 |
gatgtggtgcttatatggctgagatatggggtgcgttcgtaggtttaaaattaacctatagcaaaggatataagattgagttgctcttagaagcaaaggt |
46737252 |
T |
|
| Q |
362 |
ggtagctgaaaatattcttgatcctaatacagtgttgacagattggtggaggctagtgcaacatattcgtcggatacttcaaacagattgtgaagttaga |
461 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46737251 |
ggtagctgaaaatattcttgatcctaatacagtgtagacagattggtggaggctagtgcaacatattcgtcggatacttcaaacagattgtgaagttaga |
46737152 |
T |
|
| Q |
462 |
gtgtgtcatgtgtaccgtgaaactaatggtagtgcagatgccttcattaatatggaatgtgatcatgatccatacatggttttctatgagcaacaacatc |
561 |
Q |
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||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46737151 |
gtgtgtcatgtgtaccgtgaagctaatggttgtgcagatgccttcattaatatggaatgcgatcatgatccatacatggttttctatgagcaacaacatc |
46737052 |
T |
|
| Q |
562 |
ccctgttgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacatccaatctctcaaacaacaaaacaagagata |
661 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46737051 |
ccctgttgatatagcattcatccacgttctgttcaaaaaacaattgctccttttatcccatagcacacatccaatctctcaaacaacaaaacaagagata |
46736952 |
T |
|
| Q |
662 |
tcaatgctcatgagtcatgaatgcatagacgacacattgagtatcccataaatcaatgactcacaataccagcaagcaacacaatactagttcaatatct |
761 |
Q |
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| T |
46736951 |
tcaatgctcatgagtcatgaatgcatagacgacacattgagtatcccataaatcaatgactcacaataccagcaagcaacacaatactagttcaat---- |
46736856 |
T |
|
| Q |
762 |
ttttcaatatctaatatagaatatatatgaagtcaactagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctccgatatttc |
861 |
Q |
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|||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46736855 |
--------atctaatataaaatatatatgaagtcaaccagtaaattgacaagcaagccaacaaatgacagttgaaggctgcaacatacctccgatatttc |
46736764 |
T |
|
| Q |
862 |
catagacaacaactccgatatttccataaacgacaatgacttacttaatgtacataataatactcattaaaaattgagtatgactattatggg-cacgag |
960 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |
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| T |
46736763 |
catagacaacaactccgatatttccatagacgacaatgacttacttaatgtacataattatactcattaaaaattgagtatgattattatgggccacgag |
46736664 |
T |
|
| Q |
961 |
caggtttaaaacaaaaacaaaatggagtctggtcttctc-tatca-tccgcctcctttgcttgtatca--tttcttcaaca-tgtcaccacatctttcat |
1055 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||| | ||||| |||||||||||||||||| |
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| T |
46736663 |
caggtttaaaacaaaaacaaaatggagtctggtcttctcttatcattccgcctcctttgcttgtatcaattttttccaacattgtcaccacatctttcat |
46736564 |
T |
|
| Q |
1056 |
tt-cggacgcttt |
1067 |
Q |
| |
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|| |||||||||| |
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| T |
46736563 |
ttccggacgcttt |
46736551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 46737456 - 46737412
Alignment:
| Q |
222 |
ttagatgaccacctcctccgggaagaagataggcgagcaggatgt |
266 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46737456 |
ttagatgaccacctcctccgggaagaaggtaggcgagcaggatgt |
46737412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 1790204 - 1790159
Alignment:
| Q |
333 |
aagattgagttgctcttagaagcaaaggtggtagctgaaaatattc |
378 |
Q |
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||||||||||||| |||||| |||||||||||| ||||||||||| |
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| T |
1790204 |
aagattgagttgcacttagacacaaaggtggtagttgaaaatattc |
1790159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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