View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4733-Insertion-2 (Length: 1030)

Name: NF4733-Insertion-2
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4733-Insertion-2
NF4733-Insertion-2
[»] chr3 (2 HSPs)
chr3 (8-300)||(24618029-24618318)
chr3 (397-556)||(24618418-24618577)
[»] chr8 (18 HSPs)
chr8 (772-1024)||(1344322-1344576)
chr8 (823-1024)||(1354986-1355189)
chr8 (18-231)||(1343620-1343833)
chr8 (18-231)||(1355754-1355967)
chr8 (397-555)||(1344030-1344188)
chr8 (397-555)||(1355399-1355557)
chr8 (601-727)||(1355223-1355349)
chr8 (601-654)||(1344238-1344291)
chr8 (32-120)||(1353437-1353525)
chr8 (69-135)||(11367034-11367100)
chr8 (231-300)||(1343870-1343939)
chr8 (231-300)||(1355648-1355717)
chr8 (46-155)||(1350094-1350203)
chr8 (400-524)||(1361143-1361261)
chr8 (240-300)||(1360977-1361037)
chr8 (452-524)||(1350615-1350687)
chr8 (241-300)||(1350323-1350382)
chr8 (245-287)||(11367995-11368037)
[»] chr1 (1 HSPs)
chr1 (936-1024)||(29051974-29052064)
[»] chr2 (3 HSPs)
chr2 (47-222)||(43364826-43365001)
chr2 (417-486)||(43364468-43364537)
chr2 (247-287)||(43364733-43364773)
[»] chr7 (1 HSPs)
chr7 (242-300)||(13590357-13590415)


Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 8 - 300
Target Start/End: Original strand, 24618029 - 24618318
Alignment:
8 gatgtctgtcgcaaaataccgtcagttagaaccattgtatgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacac 107  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24618029 gatgtctgtcgcaaaataccttcagttagaaccattgtatgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacac 24618128  T
108 gacatatttcatttgcctgatgatcttatggaggaagagaaattggagcagatgttaaacataacttgcgatccaagtatcaggtttatgaactgcttgt 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
24618129 gacatatttcatttgcctgatgatcttatggaggaagagaaattggagcagatgttaaacataacttgcgatccaagtatcaggcttatgaactgcttgt 24618228  T
208 atgcaaagaagagaaaacaacttaagaagaagatgtagtagatgaacgttcagttgacgagcttttgtcttttattaatgaatcaaatgatgg 300  Q
    |||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24618229 atgcaaagaagagaaaacaactt---aagaagatgtagtagatgaacgttcagttgacgagcttttgtcttttattaatgaatcaaatgatgg 24618318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 160; E-Value: 1e-84
Query Start/End: Original strand, 397 - 556
Target Start/End: Original strand, 24618418 - 24618577
Alignment:
397 tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24618418 tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg 24618517  T
497 gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcatag 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
24618518 gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcatag 24618577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 772 - 1024
Target Start/End: Original strand, 1344322 - 1344576
Alignment:
772 gattataattatgatgctaatgctatattgtgttgaacacggtgcatgatttcaaatattagaatcatgtaaatcttttagaaagttccacttctatgag 871  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
1344322 gattataattatcatgctaatgctatattgtgctgaacacggtgcatgatttcaaatattagaatgacgtaaatcttttagaaagttccacttctatgag 1344421  T
872 tgcttgagctatctactcgatcgataatctcattttatgtcgatcactcgacaatatctgttttggtagagtaagcatttttaaattttgaatagcttta 971  Q
    |||||||||||||||||  |||| ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||| |    
1344422 tgcttgagctatctacttaatcggtaatctcattttatgccgatcgctctacaatatctgttttggtagagtaagcatttttaaattttgaattgcttca 1344521  T
972 tcactatttcaactatgcaac-atttcc-tgtgattgtgaagtcagtgtgttact 1024  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
1344522 tcactatttcaactatgcaacaatttccttgtgattgtgaagtcagtgtgttact 1344576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 823 - 1024
Target Start/End: Complemental strand, 1355189 - 1354986
Alignment:
823 tcaaatattagaatcatgtaaatcttttagaaagttccacttctatgagtgcttgagctatctactcgatcgataatctcattttatgtcgatcactcga 922  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||  |    
1355189 tcaaatattaggatcatgtaaatcttttagaaagttccatttctatgagtgcttgagctatctactcaatcgataatctcgttttatgtcgatcacttca 1355090  T
923 caatatctgttttggtagagtaagcatttttaaattttgaatagctttatcactatttcaactatgcaa-catttcc-tgtgattgtgaagtcagtgtgt 1020  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||  |||||| |||||||||||||||| |||||    
1355089 caatatctgttttggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaagaatttccttgtgattgtgaagtcaatgtgt 1354990  T
1021 tact 1024  Q
    ||||    
1354989 tact 1354986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 1343620 - 1343833
Alignment:
18 gcaaaataccgtcagttagaaccattgtatgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacacgacatatttc 117  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||| || ||||||| |||||||  ||||| |||||||||| |||||||||||    
1343620 gcaaaataccttcagttaaatccattgtatgatctcacatgtcatgcaataactagaataattgaaggaaaatcatctgaggagatacgcgacatatttc 1343719  T
118 atttgcctgatgatcttatggaggaagagaaattggagcagatgttaaacataacttgcgatccaagtatcaggtttatgaactgcttgtatgcaaagaa 217  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| |||||||||||| || ||||| ||||||||||||||||    
1343720 atttgcctgatgatcttatggaggaagagaagttggagctgatgttaaacctaacttgcgacccaagtatcaggcttttgaacagcttgtatgcaaagaa 1343819  T
218 gagaaaacaactta 231  Q
    |||| |||||||||    
1343820 gagagaacaactta 1343833  T

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Target: chr8; HSP #4
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 1355967 - 1355754
Alignment:
18 gcaaaataccgtcagttagaaccattgtatgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacacgacatatttc 117  Q
    |||||||||| ||||||| | |||||||||||||||||||||||||||||| || ||||||| |||||||  ||||| |||||||||| |||||||||||    
1355967 gcaaaataccttcagttaaatccattgtatgatctcacatgtcatgcaataactagaataattgaaggaaaatcatctgaggagatacgcgacatatttc 1355868  T
118 atttgcctgatgatcttatggaggaagagaaattggagcagatgttaaacataacttgcgatccaagtatcaggtttatgaactgcttgtatgcaaagaa 217  Q
    ||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||| |||||||||||| || ||||| ||||||||||||||||    
1355867 atttgcctgatgatcttatggaggaagagaagttggagctgatgttaaacctaacttgcgacccaagtatcaggcttttgaacagcttgtatgcaaagaa 1355768  T
218 gagaaaacaactta 231  Q
    |||| |||||||||    
1355767 gagagaacaactta 1355754  T

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Target: chr8; HSP #5
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 397 - 555
Target Start/End: Original strand, 1344030 - 1344188
Alignment:
397 tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg 496  Q
    ||||| ||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||    
1344030 tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg 1344129  T
497 gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcata 555  Q
    |||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||    
1344130 gaagagagaaaaaaagaaattcttagagatgctggcaatcacagggaaattattgcata 1344188  T

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Target: chr8; HSP #6
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 397 - 555
Target Start/End: Complemental strand, 1355557 - 1355399
Alignment:
397 tgatcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgg 496  Q
    ||||| ||||||||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||| ||| |||||    
1355557 tgatcttgtggttgagtttgatgatgagattgatcaggccttacaggaaagaattgacagggaagtcgaagaatttgcacgcagattaaattgttcttgg 1355458  T
497 gaagagaggaaaatagaaattcttagaggtgctggcaatcacaaggaaattattgcata 555  Q
    |||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||    
1355457 gaagagagaaaaaaagaaattcttagagatgctggcaatcacagggaaattattgcata 1355399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 601 - 727
Target Start/End: Complemental strand, 1355349 - 1355223
Alignment:
601 cttatggacaaaactcttctcaatattagcaaatcttgttcaggattagaaatcattagtataaattggcattaattatatttttactcttgcaggttac 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||    
1355349 cttatggacaaaactcttctcaatattagcaaatcttgttcaggattagaaatcattagtataagttgacatttattatatttttactcttgcaggttac 1355250  T
701 aacataataattagaattctgatatga 727  Q
    | |||||||||||||| ||||||||||    
1355249 agcataataattagaaatctgatatga 1355223  T

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Target: chr8; HSP #8
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 601 - 654
Target Start/End: Original strand, 1344238 - 1344291
Alignment:
601 cttatggacaaaactcttctcaatattagcaaatcttgttcaggattagaaatc 654  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
1344238 cttatggacaaaactcttcttaatattagcaaatcttgttcaggattagaaatc 1344291  T

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Target: chr8; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 1353437 - 1353525
Alignment:
32 gttagaaccattgtatgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacacgacatatttcatt 120  Q
    |||| |||||||||||| |||||||||| ||||||||||||||||||| |||||||  ||||| |||| |||||||| || ||||||||    
1353437 gttaaaaccattgtatgttctcacatgttatgcaatagctcgaataattgaaggaaaatcatctgaggtgatacacggcacatttcatt 1353525  T

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Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 69 - 135
Target Start/End: Original strand, 11367034 - 11367100
Alignment:
69 gctcgaataatcgaaggaaggtcatcggaggagatacacgacatatttcatttgcctgatgatctta 135  Q
    ||||||||||| |||||||| ||| ||||||||||||  || |||||||||||||||||||||||||    
11367034 gctcgaataattgaaggaagatcaccggaggagatacgtgatatatttcatttgcctgatgatctta 11367100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 300
Target Start/End: Original strand, 1343870 - 1343939
Alignment:
231 aagaagaagatgtagtagatgaacgttcagttgacgagcttttgtcttttattaatgaatcaaatgatgg 300  Q
    |||| ||||||||||| |||| |||||||||||| ||||| |||||||||||||||| ||| ||||||||    
1343870 aagacgaagatgtagtggatggacgttcagttgatgagctattgtcttttattaatggatcgaatgatgg 1343939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 300
Target Start/End: Complemental strand, 1355717 - 1355648
Alignment:
231 aagaagaagatgtagtagatgaacgttcagttgacgagcttttgtcttttattaatgaatcaaatgatgg 300  Q
    |||| ||||||||||| |||| |||||||||||| ||||| |||||||||||||||| ||| ||||||||    
1355717 aagacgaagatgtagtggatggacgttcagttgatgagctattgtcttttattaatggatcgaatgatgg 1355648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 155
Target Start/End: Original strand, 1350094 - 1350203
Alignment:
46 atgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacacgacatatttcatttgcctgatgatcttatggaggaaga 145  Q
    |||||||||||||||||||| |||| ||| |||| |||||||  ||| |  ||||||||| |||||| |||  || |||| |||||||||  ||||||||    
1350094 atgatctcacatgtcatgcattagcacgattaattgaaggaaaatcacccaaggagatacgcgacatgtttatttggcctcatgatcttacagaggaaga 1350193  T
146 gaaattggag 155  Q
    || |||||||    
1350194 gatattggag 1350203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 400 - 524
Target Start/End: Original strand, 1361143 - 1361261
Alignment:
400 tcctgtggttgagtttaatgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaactgtgcttgggaa 499  Q
    |||||||||||||||| |||||||||||||||| | |||      ||  | |||||  ||||||||||||||||| ||||||||||| ||| || | |||    
1361143 tcctgtggttgagtttgatgatgagattgatcatgactt------aatgactgacaaagaagtggaagaatttgcgcgcagattaaattgtactcgcgaa 1361236  T
500 gagaggaaaatagaaattcttagag 524  Q
    ||||| | || ||||||||||||||    
1361237 gagagaataaaagaaattcttagag 1361261  T

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Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 240 - 300
Target Start/End: Original strand, 1360977 - 1361037
Alignment:
240 atgtagtagatgaacgttcagttgacgagcttttgtcttttattaatgaatcaaatgatgg 300  Q
    ||||||||||||||||  || |||| |||||| ||||||||||||||| ||||||||||||    
1360977 atgtagtagatgaacgaccaattgaagagcttgtgtcttttattaatggatcaaatgatgg 1361037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 452 - 524
Target Start/End: Original strand, 1350615 - 1350687
Alignment:
452 gacagggaagtggaagaatttgcacgcagattaaactgtgcttgggaagagaggaaaatagaaattcttagag 524  Q
    ||||| ||||||||||||||||| ||||||||||| ||  ||| ||||||||| | || ||||| ||||||||    
1350615 gacagagaagtggaagaatttgcgcgcagattaaattgcactttggaagagagaataaaagaaactcttagag 1350687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 241 - 300
Target Start/End: Original strand, 1350323 - 1350382
Alignment:
241 tgtagtagatgaacgttcagttgacgagcttttgtcttttattaatgaatcaaatgatgg 300  Q
    ||||| ||||||||| ||  |||| |||||| ||||||||||||||| ||||||||||||    
1350323 tgtagaagatgaacgatccattgaagagcttctgtcttttattaatggatcaaatgatgg 1350382  T

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Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 245 - 287
Target Start/End: Original strand, 11367995 - 11368037
Alignment:
245 gtagatgaacgttcagttgacgagcttttgtcttttattaatg 287  Q
    ||||| |||||||||||||| || |||||||||||||||||||    
11367995 gtagacgaacgttcagttgatgaccttttgtcttttattaatg 11368037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 936 - 1024
Target Start/End: Complemental strand, 29052064 - 29051974
Alignment:
936 ggtagagtaagcatttttaaattttgaatagctttatcactatttcaactatgcaacatttcc--tgtgattgtgaagtcagtgtgttact 1024  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| || |  ||||||||||||||||||||||||||    
29052064 ggtagagtaagcatttttaaattttgaattgcttcatcactatttcaactatgcaacaatttctttgtgattgtgaagtcagtgtgttact 29051974  T

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Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 47 - 222
Target Start/End: Complemental strand, 43365001 - 43364826
Alignment:
47 tgatctcacatgtcatgcaatagctcgaataatcgaaggaaggtcatcggaggagatacacgacatatttcatttgcctgatgatcttatggaggaagag 146  Q
    |||||||||| ||| |||| ||||||||||||| |||  ||||||  | ||||| |||| |  |||||||| | |||||||||||||||  |||||||||    
43365001 tgatctcacaagtcgtgcactagctcgaataattgaaaaaaggtcgccagaggaaatacgcagcatatttcgtgtgcctgatgatcttaccgaggaagag 43364902  T
147 aaattggagcagatgttaaacataacttgcgatccaagtatcaggtttatgaactgcttgtatgcaaagaagagaa 222  Q
    ||||||||||   |||||||||| |||   || ||||| |||||| || ||||| |||||||||| ||||||||||    
43364901 aaattggagcccttgttaaacatcactgatgacccaagcatcaggcttttgaaccgcttgtatgccaagaagagaa 43364826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 417 - 486
Target Start/End: Complemental strand, 43364537 - 43364468
Alignment:
417 atgatgagattgatcaggtcttgcaggaaaaaattgacagggaagtggaagaatttgcacgcagattaaa 486  Q
    ||||||||||||||| || ||| || | || |||||| |||||||||||||||||||| |||||||||||    
43364537 atgatgagattgatccggccttacaagcaagaattgatagggaagtggaagaatttgcccgcagattaaa 43364468  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 247 - 287
Target Start/End: Complemental strand, 43364773 - 43364733
Alignment:
247 agatgaacgttcagttgacgagcttttgtcttttattaatg 287  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
43364773 agatgaacgttcagttgacgaccttctgtcttttattaatg 43364733  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 13590357 - 13590415
Alignment:
242 gtagtagatgaacgttcagttgacgagcttttgtcttttattaatgaatcaaatgatgg 300  Q
    ||||||||||||||  || |||||||||||||||| |||||||||| ||||||||||||    
13590357 gtagtagatgaacgaccaattgacgagcttttgtcgtttattaatggatcaaatgatgg 13590415  T

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