View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4733-Insertion-3 (Length: 1023)
Name: NF4733-Insertion-3
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4733-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 344 - 709
Target Start/End: Complemental strand, 22328553 - 22328188
Alignment:
| Q |
344 |
ctctgaagcataataggatcttgaaaagattgcaatgagagacggagatcttgctgctgggtggttgccgccgttcgagagagtaaatccggcggctgtt |
443 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22328553 |
ctctgaagcataataggatcttgaaaagattgcaatgagagacggagatcttgctgctgggtggttgccgccgttcgagagagtaaatccggcggttgtt |
22328454 |
T |
|
| Q |
444 |
gataactgtgaaaagatgtggtgggcgtttcaactggaaagaaagacttaatagtatccgcaatgtcagtgtctaacgagccttgaagaaaaccatgttt |
543 |
Q |
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||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328453 |
gataattgtgaaaagatgtggtgggcgtttcaactgggaaaaaagacttaatagtatccgcaatgtcagtgtctaacgagccttgaagaaaaccatgttt |
22328354 |
T |
|
| Q |
544 |
cccactgctactactgttgtagtctatctccaactgttgttgttgggaaggaaattgttgttcgtgtggtggcattcttcgctctaatgccgctgagcgg |
643 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328353 |
cccactgctactactgttgtagtctatctccaactgttgttgttgggaaggaaattgttgttcgtgtggtggcattcttcgctctaatgccgctgagcgg |
22328254 |
T |
|
| Q |
644 |
tgactggtagaagcggttactggattgttgtccaccggagattgccggtgaaacatttcatttgtt |
709 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328253 |
tgactggtagaagcggttactggattgttgtccaccggagattgccggtgaaacatttcatttgtt |
22328188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 22328890 - 22328597
Alignment:
| Q |
7 |
agcacgaactgaaggattgtaactggactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328890 |
agcacgaactgaaggattgtaactggactgaaggggtcccctctgagtaaaaaactgaccataaccgccaaacgccggtgccggtgtactgaacacaaat |
22328791 |
T |
|
| Q |
107 |
ccagcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcct |
206 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22328790 |
ccagcaccatggccactgttaccaccatctgcagcattagcattaatattattagcattccaagccatcattctattcaatctgccgttatcatgttcct |
22328691 |
T |
|
| Q |
207 |
cttgatgctgatgctgttgttgctgctcagaccacaaggtgcttccacttccaccaccgtcgtaaccaagggaggagtttccggcgaaaagcac |
300 |
Q |
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| T |
22328690 |
cttgatgctgctgctgttgttgctgctcagaccacaaggtgcttccacttccaccaccgtcgtaaccaagggaggagtttccggcgaaaagcac |
22328597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 267; E-Value: 1e-148
Query Start/End: Original strand, 733 - 1023
Target Start/End: Complemental strand, 22328167 - 22327879
Alignment:
| Q |
733 |
tggtgttgaagaacatgtagctgtggggttccaagcggggaggtgagcgagttcgtcgatagcagatttagcttttttaatgagccaatcaactgcttta |
832 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22328167 |
tggtgttgaagaacatgtagctgtggggttccaagcggggaggtgagcgagttcgtcgatagcagatttagcttttttaatgagccaatcgactgcttta |
22328068 |
T |
|
| Q |
833 |
cttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgtacacggcggtcacggggacctttcgcggtgc |
932 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22328067 |
cttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcgtacacggcggtcacggggacctttcgcggtgc |
22327968 |
T |
|
| Q |
933 |
aaactttacttgtgacggtctttccgtcctggtgaacggaacaatgtgacctccttgtacctccacgatttctcctcctcctccgctgctg |
1023 |
Q |
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| T |
22327967 |
aaactttac-tgtgacggtctttccgtcctgttgaacgg-acaatgtgacctccttgtacctccacgatttctcctcctcctccgctgctg |
22327879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 2534998 - 2535105
Alignment:
| Q |
109 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
208 |
Q |
| |
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|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||| |
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| T |
2534998 |
agcaccatggccactgttaccaccatctacagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgatcctct |
2535097 |
T |
|
| Q |
209 |
tgatgctg |
216 |
Q |
| |
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|| ||||| |
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| T |
2535098 |
tgctgctg |
2535105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 9e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 109 - 216
Target Start/End: Complemental strand, 11447860 - 11447753
Alignment:
| Q |
109 |
agcaccatggccactgttgccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctgccgttatcatgttcctct |
208 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
11447860 |
agcaccatggccactgttaccaccatctgcagcattagcattaacattattagcattccaagccatcattctatgcaatctaccactatcatgttcctct |
11447761 |
T |
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| Q |
209 |
tgatgctg |
216 |
Q |
| |
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|| ||||| |
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| T |
11447760 |
tgctgctg |
11447753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 803 - 900
Target Start/End: Original strand, 30768316 - 30768413
Alignment:
| Q |
803 |
gcttttttaatgagccaatcaactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtcg |
900 |
Q |
| |
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||||| || ||||||||||| |||||||| ||||| | |||||||||||| |||||||| || |||||||||| || || ||||| ||||||||||| |
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| T |
30768316 |
gctttcttgatgagccaatccactgctttgcttggtctgtcgtagccgaggcgatcttgaacatcgtagaattcgatggctgtgtgtgctgagagtcg |
30768413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 794 - 927
Target Start/End: Original strand, 39077281 - 39077414
Alignment:
| Q |
794 |
gcagatttagcttttttaatgagccaatcaactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctg |
893 |
Q |
| |
|
||||| ||||| ||||| || ||||||||||| |||||||| || | ||||||||||||||| ||||| || || ||||||||||| || ||||| |||| |
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| T |
39077281 |
gcagacttagcctttttgataagccaatcaacagctttactcggtctgtcgtagccgagacggtcttgaacatcatagaattgaattgctgtgtgtgctg |
39077380 |
T |
|
| Q |
894 |
agagtcgtacacggcggtcacggggacctttcgc |
927 |
Q |
| |
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| | ||| ||||| || ||||| ||||||||||| |
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| T |
39077381 |
ataatcgaacacgtcgatcacgaggacctttcgc |
39077414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 7 - 51
Target Start/End: Complemental strand, 32507066 - 32507022
Alignment:
| Q |
7 |
agcacgaactgaaggattgtaactggactgaaggggtcccctctg |
51 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32507066 |
agcacgaactgaaggattgtaactggactgaaggggtcccctctg |
32507022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 800 - 942
Target Start/End: Complemental strand, 32506585 - 32506443
Alignment:
| Q |
800 |
ttagcttttttaatgagccaatcaactgctttacttggccggtcgtagccgagacgatcttgcacgtcgtagaattgaatcgcagtgtgggctgagagtc |
899 |
Q |
| |
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|||||||| |||||||||||||||| ||||||||| |||| || |||| || |||||||| || ||||| |||| ||| || || ||||| ||||| | |
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| T |
32506585 |
ttagctttattaatgagccaatcaagtgctttactgggcctatcaaagcccagtcgatcttgaacatcgtaaaattcaatagcggtatgggccgagagac |
32506486 |
T |
|
| Q |
900 |
gtacacggcggtcacggggacctttcgcggtgcaaactttact |
942 |
Q |
| |
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| || || | ||| | || |||||||| |||||||||||||| |
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| T |
32506485 |
gaacgcgtctgtctctcggccctttcgccgtgcaaactttact |
32506443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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