View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4733_high_3 (Length: 361)
Name: NF4733_high_3
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4733_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 7308014 - 7307890
Alignment:
| Q |
88 |
atcaatcttttattatggaaatggtgattgagtaattcgaagttgtcatgttgcctctattatgaatagtgttaggatcctcgtatgtgtatggtaagtt |
187 |
Q |
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| T |
7308014 |
atcaagcttttattgtagaaatggtgattgagtaaatcgaagttgtctcattgcctctgttatgaatggtgttgggatccttgtatgtgtatggttggtt |
7307915 |
T |
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| Q |
188 |
gagattacggtttttggttggattt |
212 |
Q |
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| T |
7307914 |
gagattgcggtttttggtttgattt |
7307890 |
T |
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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 13245579 - 13245530
Alignment:
| Q |
177 |
tatggtaagttgagattacggtttttggttggatttagctggtttttgag |
226 |
Q |
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| T |
13245579 |
tatggtaagttgagattacggtttttggttcgatttagctggtttttgag |
13245530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 316 - 354
Target Start/End: Complemental strand, 13245438 - 13245400
Alignment:
| Q |
316 |
ccatccctgtatttgtggggttagtcttaattccctatg |
354 |
Q |
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| T |
13245438 |
ccatccctgtgtttgtggggttagtcttaattccctatg |
13245400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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