View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4733_high_4 (Length: 335)
Name: NF4733_high_4
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4733_high_4 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 35882986 - 35882679
Alignment:
| Q |
11 |
cagagaataggacattagaaaattaaaaacccgtgaaagctagccattaatgaatgatagttgcattgcagtaaggtaactactcgaaagaaatcaaaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35882986 |
cagagaataggacattagaaaattaaaaacccgtgaaagc----cattaatgaatgatagttgca-----gtaaggtaactactcgaaagaaatcaaaat |
35882896 |
T |
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| Q |
111 |
tcaaaacattgaatcannnnnnnnctgtacggtacacac----atacctgcaatacagtaaccagaaagaggcaacaagtttggatgtttcagtttcgat |
206 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882895 |
tcaaaacattgaatcattttttttctgtacggtacacacatacatacctgcaatacagtaaccagaaagaggcaacaagtttggatgtttcagtttcgat |
35882796 |
T |
|
| Q |
207 |
aagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgggtaacacggcccaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35882795 |
aagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgggcaacacggcccaat |
35882696 |
T |
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| Q |
307 |
acactggtccacacctt |
323 |
Q |
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||||||||||||||||| |
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| T |
35882695 |
acactggtccacacctt |
35882679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 323
Target Start/End: Complemental strand, 24457187 - 24456880
Alignment:
| Q |
11 |
cagagaataggacattagaaaattaaaaacccgtgaaagctagccattaatgaatgatagttgcattgcagtaaggtaactactcgaaagaaatcaaaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
24457187 |
cagagaataggacattagaaaattaaaaacccgtgaaagc----cattaatgaatgatagttgca-----gtaaggtaactactcgaaagaaatcaaaat |
24457097 |
T |
|
| Q |
111 |
tcaaaacattgaatcannnnnnnnctgtacggtacacac----atacctgcaatacagtaaccagaaagaggcaacaagtttggatgtttcagtttcgat |
206 |
Q |
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|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24457096 |
tcaaaacattgaatcattttttttctgtacggtacacacatacatacctgcaatacagtaaccagaaagaggcaacaagtttggatgtttcagtttcgat |
24456997 |
T |
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| Q |
207 |
aagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgggtaacacggcccaat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24456996 |
aagtcaacaaacatagccacagagtcatcataatcaacgtctctgacatgttcaagaaccttgattgccacgtgtatttcaccgggcaacacggcccaat |
24456897 |
T |
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| Q |
307 |
acactggtccacacctt |
323 |
Q |
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||||||||||||||||| |
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| T |
24456896 |
acactggtccacacctt |
24456880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 282
Target Start/End: Original strand, 2132 - 2264
Alignment:
| Q |
151 |
tacctgcaatacagtaaccagaaagaggcaacaagtttggatgtttcagtttcgataagtcaa-caaacatagccacagagtcatcataatcaacgtctc |
249 |
Q |
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||||||| || |||||||||||||| ||||| | || |||||||| || || || ||||||| |||| || | |||| ||||||| |||||| |||| |
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| T |
2132 |
tacctgcgatgcagtaaccagaaagtggcaaaagattgggatgtttaagcttagacaagtcaaacaaaagtatcaacagcatcatcatgatcaacctctc |
2231 |
T |
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| Q |
250 |
tgacatgttcaagaaccttgattgccacgtgta |
282 |
Q |
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| T |
2232 |
tagcattttcaagaaccttaattgccacgtgta |
2264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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