View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4733_high_7 (Length: 237)
Name: NF4733_high_7
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4733_high_7 |
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| [»] scaffold0722 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 35882651 - 35882430
Alignment:
| Q |
1 |
aaatgtgacgtggcaatgatgagatctttgaatgtgaagttcatcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882651 |
aaatgtgacgtggcaatgatgagatctttgaatgtgaagttcatcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaa |
35882552 |
T |
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| Q |
101 |
cccatgttgttcctgattctgtttcaaactcaaatggtcctgttttctctacctttgtgtttgttttgttcatcataactggtaatgagatagcccattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35882551 |
cccatgttgttcctgattctgtttcaaactcaaatggtcctgttttctctacctttgtgtttgttttgttcatcataactggtaatgagatagcccattt |
35882452 |
T |
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| Q |
201 |
cttcatcttggaacgttgtttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
35882451 |
cttcatcttggaacgttgtttc |
35882430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 24456852 - 24456631
Alignment:
| Q |
1 |
aaatgtgacgtggcaatgatgagatctttgaatgtgaagttcatcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456852 |
aaatgtgacgtggcaatgatgagatctttgaatgtgaagttcatcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaa |
24456753 |
T |
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| Q |
101 |
cccatgttgttcctgattctgtttcaaactcaaatggtcctgttttctctacctttgtgtttgttttgttcatcataactggtaatgagatagcccattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24456752 |
cccatgttgttcctgattctgtttcaaactcaaatggtcctgttttctctacctttgtgtttgttttgttcatcataactggtaatgagatagcccattt |
24456653 |
T |
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| Q |
201 |
cttcatcttggaacgttgtttc |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
24456652 |
cttcatcttggaacgttgtttc |
24456631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0722 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0722
Description:
Target: scaffold0722; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 149
Target Start/End: Original strand, 2371 - 2481
Alignment:
| Q |
39 |
gttcatcaatggtttctcaaacatcaccactgctgcagatgttggttctttcacatctgcaacccatgttgttcctgattctgtttcaaactcaaatggt |
138 |
Q |
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||||||||| |||||||||||||| || |||| ||| || ||||||||||| | ||| || ||||| | |||||| |||||||| ||||| |||| ||| |
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| T |
2371 |
gttcatcaaaggtttctcaaacatgacaactgatgctgaagttggttcttttagatcagctacccacgatgttccagattctgtctcaaatgcaaacggt |
2470 |
T |
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| Q |
139 |
cctgttttctc |
149 |
Q |
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|| | |||||| |
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| T |
2471 |
ccagatttctc |
2481 |
T |
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