View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4733_low_1 (Length: 427)
Name: NF4733_low_1
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4733_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 36413606 - 36414006
Alignment:
| Q |
1 |
aaaccttcatctaaaatgaagataaaaatgagatcatttgcaattcttgccaccctaatgtggatttccaaatcttacttttaccacagcgagtgaccat |
100 |
Q |
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| T |
36413606 |
aaaccttcctctaaaatgaagataaaaatgagatcatttgcaattcttgccaccctaatgtggatttccaaatcttacttttaccacagcgagtgaccat |
36413705 |
T |
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| Q |
101 |
tgataaagtttgaagctgctagttttctgacctacaaagtcctctatgtcatcctagcgagaatgaagccaagtaaactatatggaaaacaaaagggaca |
200 |
Q |
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| T |
36413706 |
tgataaagtttgaagctgctagttttctgacctacaaagtcctctatgtcatcctagcgagaatgaagccaagtaaactatatggaaaacaaaagggata |
36413805 |
T |
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| Q |
201 |
acaacatgacactgtaaatagtagctataagttattttttcctttgaaagacctactccagcagaaaagcgtgaaagcttaagaattattattgagataa |
300 |
Q |
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| T |
36413806 |
acaacatgagacggtaaatagtagctataagttattttttcctttgaaagacctactccagcagaaaagcgtgaaagcttaagaattattattgagataa |
36413905 |
T |
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| Q |
301 |
gtattttgagtttgaataaccatgagacatggttattattttgattcaatattctttaataatttggtaagtaagatcaagttcatattatttaaattta |
400 |
Q |
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| T |
36413906 |
gtattttgattttgaataaccatgagacatggttattattttgattcaatattctataatgatttggtaagtaagatcaagttcagattatttaaattta |
36414005 |
T |
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| Q |
401 |
t |
401 |
Q |
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| T |
36414006 |
t |
36414006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 399
Target Start/End: Original strand, 36407537 - 36407695
Alignment:
| Q |
247 |
aaagacctactccagcagaaaagcgtgaaagcttaagaattattattgagataagtattttgagtttg-------aataaccatgagacatggttattat |
339 |
Q |
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| T |
36407537 |
aaagacttactctagcagaaaagcgtgaaatctcaagaattattattgtgatatgtatcttgattttgaattttgaataaccatgatacatgattattat |
36407636 |
T |
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| Q |
340 |
tttgattcaatattctttaataatttggtaagtaagatcaagttcatattatttaaattt |
399 |
Q |
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| T |
36407637 |
tttgaatcaatattctacaatgattt-gtaactaagatcaagttcaaattatttaaattt |
36407695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 17378967 - 17379026
Alignment:
| Q |
94 |
tgaccattgataaagtttgaagctgctagttttctgacctacaaagtcctctatgtcatcc |
154 |
Q |
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| T |
17378967 |
tgaccattgctaaagtttggagctgc-agtttcctcacctacaaagttctctgtgtcatcc |
17379026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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