View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4733_low_11 (Length: 231)

Name: NF4733_low_11
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4733_low_11
NF4733_low_11
[»] scaffold0045 (1 HSPs)
scaffold0045 (104-218)||(30159-30273)
[»] chr4 (12 HSPs)
chr4 (96-218)||(13393617-13393739)
chr4 (96-218)||(13396756-13396878)
chr4 (96-218)||(36048966-36049088)
chr4 (96-203)||(2228948-2229055)
chr4 (168-218)||(18891118-18891168)
chr4 (168-218)||(33366834-33366884)
chr4 (157-218)||(35904991-35905052)
chr4 (157-218)||(42567648-42567709)
chr4 (157-218)||(54256334-54256395)
chr4 (157-218)||(6262281-6262342)
chr4 (173-218)||(24423223-24423268)
chr4 (163-204)||(44160727-44160768)
[»] scaffold0062 (1 HSPs)
scaffold0062 (83-204)||(40071-40192)
[»] chr8 (11 HSPs)
chr8 (96-210)||(18324933-18325047)
chr8 (157-218)||(32038108-32038169)
chr8 (158-218)||(17497514-17497574)
chr8 (168-218)||(26005551-26005601)
chr8 (21-218)||(39517418-39517612)
chr8 (173-218)||(44626199-44626244)
chr8 (157-218)||(45266134-45266195)
chr8 (157-208)||(38151014-38151065)
chr8 (172-218)||(34548111-34548156)
chr8 (168-218)||(38143954-38144006)
chr8 (173-217)||(1262397-1262441)
[»] scaffold0027 (1 HSPs)
scaffold0027 (96-218)||(134490-134611)
[»] scaffold0502 (2 HSPs)
scaffold0502 (157-218)||(9013-9074)
scaffold0502 (157-218)||(4313-4374)
[»] scaffold0040 (2 HSPs)
scaffold0040 (157-218)||(60375-60436)
scaffold0040 (157-218)||(67851-67912)
[»] chr6 (10 HSPs)
chr6 (157-218)||(18338189-18338250)
chr6 (157-218)||(9972850-9972911)
chr6 (168-218)||(22958096-22958146)
chr6 (168-218)||(23830246-23830296)
chr6 (168-218)||(23848582-23848632)
chr6 (157-218)||(27101578-27101639)
chr6 (157-218)||(27143400-27143461)
chr6 (173-217)||(19543538-19543582)
chr6 (157-215)||(7553418-7553476)
chr6 (157-218)||(32932316-32932377)
[»] chr3 (15 HSPs)
chr3 (157-218)||(39032746-39032807)
chr3 (96-218)||(46611894-46612016)
chr3 (157-218)||(3469928-3469989)
chr3 (157-218)||(11458208-11458269)
chr3 (157-218)||(39350935-39350996)
chr3 (157-217)||(41273042-41273102)
chr3 (174-218)||(45677907-45677951)
chr3 (168-218)||(29960935-29960985)
chr3 (168-218)||(30010140-30010190)
chr3 (168-218)||(32280786-32280836)
chr3 (176-218)||(10626311-10626353)
chr3 (157-218)||(31112456-31112517)
chr3 (157-217)||(19240517-19240577)
chr3 (157-217)||(32285719-32285779)
chr3 (173-206)||(39039775-39039808)
[»] chr2 (13 HSPs)
chr2 (157-218)||(24138461-24138522)
chr2 (173-218)||(23888414-23888459)
chr2 (173-218)||(23892490-23892535)
chr2 (122-218)||(39190185-39190279)
chr2 (163-218)||(3950077-3950132)
chr2 (167-218)||(40113487-40113538)
chr2 (108-218)||(18341524-18341634)
chr2 (157-218)||(14661339-14661400)
chr2 (96-142)||(4840508-4840554)
chr2 (168-218)||(15144277-15144327)
chr2 (157-218)||(17530028-17530089)
chr2 (168-218)||(670089-670139)
chr2 (173-218)||(662857-662902)
[»] chr7 (9 HSPs)
chr7 (168-218)||(267756-267806)
chr7 (157-218)||(26450921-26450982)
chr7 (157-218)||(32517194-32517255)
chr7 (129-218)||(40771614-40771703)
chr7 (157-218)||(48853676-48853737)
chr7 (163-206)||(29148723-29148766)
chr7 (163-219)||(5172945-5173001)
chr7 (173-201)||(278838-278866)
chr7 (157-209)||(40771297-40771349)
[»] chr5 (5 HSPs)
chr5 (168-218)||(22729909-22729959)
chr5 (173-218)||(35941136-35941181)
chr5 (173-218)||(36950150-36950195)
chr5 (173-218)||(11339901-11339946)
chr5 (157-218)||(43097522-43097583)
[»] chr1 (8 HSPs)
chr1 (168-218)||(9764989-9765039)
chr1 (158-216)||(41140952-41141010)
chr1 (168-218)||(47858184-47858234)
chr1 (157-218)||(39574571-39574632)
chr1 (157-209)||(12017733-12017785)
chr1 (173-218)||(39581120-39581165)
chr1 (168-218)||(24515367-24515417)
chr1 (157-218)||(9758363-9758424)
[»] scaffold1634 (1 HSPs)
scaffold1634 (163-217)||(36-90)


Alignment Details
Target: scaffold0045 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 104 - 218
Target Start/End: Complemental strand, 30273 - 30159
Alignment:
Q  104 taactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacggctgagggc 203  Q
    ||||||||||||||| |||||||||||||||||||||||  | ||||  | | ||||| |||| |||| ||||||||||||||||||||||||||| ||     
T  30273 taactaccctcattccgtctagctttaggttttcacaatgttgttcattatacttaaccgtctgatggaatgacgtttaaatagctaaacggctgaaggt 30174  T
Q  204 agggacatctcattg 218  Q
    || ||| ||||||||    
T  30173 agagacctctcattg 30159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 9e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 13393617 - 13393739
Alignment:
Q  96 gagagggataactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacgg 195  Q
    ||||||||| ||| ||||||||| ||||| |||||||||||||||||||| |||||||   ||||| |||| |||  |||| ||||||||||||||| ||    
T  13393617 gagagggatgactgccctcattccgtctaactttaggttttcacaatactgttcagaatgtttaaccgtctgatgagatgaagtttaaatagctaaatgg 13393716  T
Q  196 ctgagggcagggacatctcattg 218  Q
    ||||||| | |||| ||||||||    
T  13393717 ctgagggaaaggacctctcattg 13393739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 13396756 - 13396878
Alignment:
Q  96 gagagggataactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacgg 195  Q
    ||||||||| ||| ||||||||| ||||| |||||||||||||||||||| |||||||   ||||| |||| |||  |||| ||||||||||||||| ||    
T  13396756 gagagggatgactgccctcattccgtctaactttaggttttcacaatactgttcagaatgtttaaccgtctgatgagatgaagtttaaatagctaaatgg 13396855  T
Q  196 ctgagggcagggacatctcattg 218  Q
    ||||||| | |||| ||||||||    
T  13396856 ctgagggaaaggacctctcattg 13396878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 36049088 - 36048966
Alignment:
Q  96 gagagggataactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacgg 195  Q
    |||||| ||||||||| |||||| || |||| ||||||||||| | || | ||||||| ||||||  || | |||| |||||||||||||||||||||||    
T  36049088 gagaggaataactaccttcattccgtttagcgttaggttttcagagtagtgttcagaataattaatcgtatgatgggatgacgtttaaatagctaaacgg 36048989  T
Q  196 ctgagggcagggacatctcattg 218  Q
    |||||||||| ||| ||||||||    
T  36048988 ctgagggcagagacctctcattg 36048966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 2229055 - 2228948
Alignment:
Q  96 gagagggataactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacgg 195  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||  | |||| || | ||||| |||| |||  ||||||||||||||| |||||||    
T  2229055 gagagggataactaccctcattccgttcagctttaggttttcacaatgttgttcaaaatacttaaccgtctgatgagatgacgtttaaatagttaaacgg 2228956  T
Q  196 ctgagggc 203  Q
     |||||||    
T  2228955 ttgagggc 2228948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 18891118 - 18891168
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  18891118 atgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 18891168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 33366884 - 33366834
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  33366884 atgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 33366834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 35904991 - 35905052
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||||||||| |||  ||||||||||||||||||||||||| ||||||| ||| ||||||||    
T  35904991 ttaactgtctgatgagatgacgtttaaatagctaaacggctaagggcagagacctctcattg 35905052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 42567648 - 42567709
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||| ||||| ||||||||||||||| ||||||||    
T  42567648 ttaaccgtctgatgggatgacgtttaaatagttaaacagctgagggcagggacctctcattg 42567709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 54256395 - 54256334
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||| |||||||||| |||| ||||||||    
T  54256395 ttaaccgtctgatgggatgacgtttaaatagctaaactgctgagggcatggacctctcattg 54256334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 6262342 - 6262281
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| || |||||||||||||||||||||| |||||||  || ||||||||    
T  6262342 ttaaccgtctgatgggataacgtttaaatagctaaacggctaagggcagacacctctcattg 6262281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 24423223 - 24423268
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||||||||||||||| ||||||| |||||| ||||||||    
T  24423223 atgacatttaaatagctaaacgactgagggaagggacctctcattg 24423268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 44160727 - 44160768
Alignment:
Q  163 gtctcatggtatgacgtttaaatagctaaacggctgagggca 204  Q
    |||| |||| |||||||||||||||||||||||| |||||||    
T  44160727 gtctgatgggatgacgtttaaatagctaaacggccgagggca 44160768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 40071 - 40192
Alignment:
Q  83 cgccgataactacgagagggataactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgttta 182  Q
    |||||| |||||  |||||||| ||||||||||||| |||||| |||| |||||||||||  | |||| || ||||||| |||| |||| |||||| |||    
T  40071 cgccgacaactataagagggatgactaccctcattccgtctagttttatgttttcacaatgatgttcataataattaaccgtctgatgggatgacggtta 40170  T
Q  183 aatagctaaacggctgagggca 204  Q
    ||||||| ||||||||||||||    
T  40171 aatagcttaacggctgagggca 40192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 18325047 - 18324933
Alignment:
Q  96 gagagggataactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacgg 195  Q
    |||||| |||||||| ||||||| || |||| ||||||||||| | |||| |||||||   ||||| |||| |||| ||||||||||||||| ||||||     
T  18325047 gagaggaataactactctcattccgtttagcgttaggttttcagagtactgttcagaatgtttaaccgtctgatgggatgacgtttaaatagttaaacga 18324948  T
Q  196 ctgagggcagggaca 210  Q
    |||||||||||||||    
T  18324947 ctgagggcagggaca 18324933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 32038108 - 32038169
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  32038108 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 32038169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 17497514 - 17497574
Alignment:
Q  158 taactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| |||| |||| |||||||||||||||||||||| |||||||||||||| ||||||||    
T  17497514 taaccgtctgatgggatgacgtttaaatagctaaacgactgagggcagggacctctcattg 17497574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 26005551 - 26005601
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  26005551 atgggatgacgtttaaatagctaaacggctgagggtagggacctctcattg 26005601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 39517612 - 39517418
Alignment:
Q  21 aatgaatgaagaaactgtgtactttgaatgaattagggttgaggaaggataaccaccgaccacgccgataactacgagagggataactaccctcattctg 120  Q
    |||||||||||||| ||||||| || ||   |||||| ||||  |||||||||| || || | || || ||||| ||||| |||||||| |||| |||      
T  39517612 aatgaatgaagaaattgtgtacctttaa---attagg-ttgataaaggataaccgccaacaaagctgacaactatgagagagataactatcctcgttcca 39517517  T
Q  121 tctagctttaggttttcacaatactattcagaagaattaactgtctcat-ggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| ||||||||||||||||  | |||||||   ||||| |||| || || |||| ||||||||||||||||| ||||  |||| ||| ||||||||    
T  39517516 tctagttttaggttttcacaatgttgttcagaatgcttaaccgtctgatgggaatgatgtttaaatagctaaacgactgaaagcagagacctctcattg 39517418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 44626244 - 44626199
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||||||    
T  44626244 atgacgtttaaatagctaaacggctgaaggcagagacctctcattg 44626199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 45266134 - 45266195
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| |||||||||||||||||||||| |||||||||| ||  ||||||||    
T  45266134 ttaaccgtctgatggaatgacgtttaaatagctaaacgactgagggcagtgatctctcattg 45266195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 38151065 - 38151014
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcaggga 208  Q
    ||||| |||| ||||  ||||||||||||||||||||| |||||||||||||    
T  38151065 ttaaccgtctgatggggtgacgtttaaatagctaaacgactgagggcaggga 38151014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 34548111 - 34548156
Alignment:
Q  172 tatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||||||||||| |||||||||||||||||||| |||| ||||||||    
T  34548111 tatgacgtttaa-tagctaaacggctgagggcaaggacctctcattg 34548156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 38144006 - 38143954
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctga--gggcagggacatctcattg 218  Q
    |||| |||| ||||||||||||||||||||||  |||||||||| ||||||||    
T  38144006 atgggatgaggtttaaatagctaaacggctgagggggcagggacctctcattg 38143954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 1262441 - 1262397
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcatt 217  Q
    ||||||||||||| |||||||||||||||||| |||  |||||||    
T  1262441 atgacgtttaaatggctaaacggctgagggcatggatctctcatt 1262397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 96 - 218
Target Start/End: Original strand, 134490 - 134611
Alignment:
Q  96 gagagggataactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacgg 195  Q
    |||||| ||||||||| |||||| || |||| ||||||||||| | || | |||||||  |||||| |||| |||| ||||||||||||||||||||||     
T  134490 gagaggaataactaccgtcattccgtttagcgttaggttttcagagta-tgttcagaatgattaaccgtctgatggaatgacgtttaaatagctaaacga 134588  T
Q  196 ctgagggcagggacatctcattg 218  Q
    ||||||  |||||| ||||||||    
T  134589 ctgaggctagggacctctcattg 134611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 9074 - 9013
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  9074 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 9013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 4374 - 4313
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||| ||||| ||||||||||||| ||||||||    
T  4374 ttaaccgtctgatgggatgacgtttaaatagctgaacggttgagggcagggacctctcattg 4313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 60436 - 60375
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  60436 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 60375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 67912 - 67851
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  67912 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 67851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 18338250 - 18338189
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  18338250 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 18338189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 9972911 - 9972850
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| || |||||||||||||||||||||||||||||||||| ||||||||    
T  9972911 ttaaccgtctgatgggataacgtttaaatagctaaacggctgagggcagggacctctcattg 9972850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 22958096 - 22958146
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  22958096 atgggatgacgtttaaatagctaatcggctgagggcagggacttctcattg 22958146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 23830296 - 23830246
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  23830296 atgggatgacgtttaaatagctaatcggctgagggcagggacttctcattg 23830246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 23848582 - 23848632
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  23848582 atgggatgacgtttaaatagctaaacggctaagggcagggacctctcattg 23848632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 27101639 - 27101578
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| || | ||||||||||||||||| |||||||||||||||||||||||    
T  27101639 ttaaccgtctgatgggataaagtttaaatagctaaacgactgagggcagggacatctcattg 27101578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 27143461 - 27143400
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| || | ||||||||||||||||| |||||||||||||||||||||||    
T  27143461 ttaaccgtctgatgggataaagtttaaatagctaaacgactgagggcagggacatctcattg 27143400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 19543582 - 19543538
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcatt 217  Q
    ||||||||||||||||||||||||| ||||||||||| |||||||    
T  19543582 atgacgtttaaatagctaaacggctaagggcagggacctctcatt 19543538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 7553418 - 7553476
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctca 215  Q
    ||||| |||| |||| |||| ||||||||| ||||||||| |||||||||||| |||||    
T  7553418 ttaaccgtctgatgggatgatgtttaaataactaaacggccgagggcagggacttctca 7553476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 32932316 - 32932377
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||| |||||| |||||||||| ||  ||||||||    
T  32932316 ttaaccgtctgatgggatgacgtttaaatagttaaacgactgagggcagagatctctcattg 32932377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 39032746 - 39032807
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  39032746 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 39032807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 46612016 - 46611894
Alignment:
Q  96 gagagggataactaccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacgg 195  Q
    |||||| |||||||||||||||| || |||| ||| ||||||| | || | || ||||   ||||| |||| |||| |||||||||||||| ||||||||    
T  46612016 gagaggaataactaccctcattccgtttagcgttaagttttcagagtattgttgagaatgtttaaccgtctgatggcatgacgtttaaataactaaacgg 46611917  T
Q  196 ctgagggcagggacatctcattg 218  Q
    |||||||||| ||| ||| ||||    
T  46611916 ctgagggcagtgacctcttattg 46611894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 3469989 - 3469928
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  3469989 ttaaccgtctgatgggatgacgtttaaatagttaaacggctgagggcagggacctctcattg 3469928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 11458269 - 11458208
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||||||||||||||||||||||||||||| |||||| |||| ||||||||    
T  11458269 ttaaccgtctgatggtatgacgtttaaatagctaaacggctaagggcatggacctctcattg 11458208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 39350996 - 39350935
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||| ||||||||||||| ||||||||    
T  39350996 ttaaccgtctgatgggatgacgtttaaatagctaaacggttgagggcagggacctctcattg 39350935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 41273102 - 41273042
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcatt 217  Q
    ||||| |||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  41273102 ttaaccgtctaatgggatgacgtttaaatagataaacggctgagggcagggacctctcatt 41273042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 45677907 - 45677951
Alignment:
Q  174 tgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||||||||||||||||||||||||||||||||||| ||||||||    
T  45677907 tgacgtttaaatagctaaacggctgagggcagggacctctcattg 45677951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 29960935 - 29960985
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  29960935 atgggatgacgtttaaatagctaaacggctgagggcagagacctctcattg 29960985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 30010140 - 30010190
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||||||||||| ||| ||||||||    
T  30010140 atgggatgacgtttaaatagctaaacggctgagggcagagacctctcattg 30010190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 32280786 - 32280836
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  32280786 atgggatgacgtttaaatagctaaacggctgagggtagggacctctcattg 32280836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 10626311 - 10626353
Alignment:
Q  176 acgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||||||||||||||||||||||||||||  |||||||    
T  10626311 acgtttaaatagctaaacggctgagggcagggaccactcattg 10626353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 31112517 - 31112456
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||| ||||||||| |||||| |||| ||||||||    
T  31112517 ttaaccgtctgatgggatgacgtttaaatagttaaacggctaagggcatggacctctcattg 31112456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 19240517 - 19240577
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcatt 217  Q
    ||||| |||| |||| || |||||||||||| ||||||| ||||||||||||| |||||||    
T  19240517 ttaaccgtctgatgggataacgtttaaatagttaaacggatgagggcagggacctctcatt 19240577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 32285719 - 32285779
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcatt 217  Q
    ||||| |||| |||| ||||||||||||| | ||||||||||||||||| ||| |||||||    
T  32285719 ttaaccgtctgatgggatgacgtttaaattgttaaacggctgagggcagagacctctcatt 32285779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 39039775 - 39039808
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagg 206  Q
    |||||||||||||||||||||| |||||||||||    
T  39039775 atgacgtttaaatagctaaacgactgagggcagg 39039808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 24138522 - 24138461
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  24138522 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 24138461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 23888414 - 23888459
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  23888414 atgacgtttaaatagctaaacggctgagggcagggacctctcattg 23888459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 23892490 - 23892535
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  23892490 atgacgtttaaatagctaaacggctgagggcagggacctctcattg 23892535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 218
Target Start/End: Complemental strand, 39190279 - 39190185
Alignment:
Q  122 ctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||||||||||||||||||||  | || |||| ||||||  ||   |||| |||||||||| |||||||||||||||||||||||||| ||||||||    
T  39190279 ctagctttaggttttcacaatgttgttgagaataattaatcgtg--atgggatgacgtttacatagctaaacggctgagggcagggacctctcattg 39190185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 3950132 - 3950077
Alignment:
Q  163 gtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||| ||||||||    
T  3950132 gtctcatgggatgacgtttaaatagttaaacggctgagggcaaggacctctcattg 3950077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 40113538 - 40113487
Alignment:
Q  167 catggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| ||||||||||||||||||||| ||||||||||||||| ||||||||    
T  40113538 catgggatgacgtttaaatagctaaacagctgagggcagggacctctcattg 40113487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 218
Target Start/End: Original strand, 18341524 - 18341634
Alignment:
Q  108 taccctcattctgtctagctttaggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacggctgagggcaggg 207  Q
    ||||||||||| || |||| ||||||||||| | || | ||| |||   ||||| |||| |||| ||||||||||||||||||||| | ||| |||||||    
T  18341524 taccctcattcggtttagcgttaggttttcagagtagtgttcggaatgcttaaccgtctgatgggatgacgtttaaatagctaaacagttgaaggcaggg 18341623  T
Q  208 acatctcattg 218  Q
    || ||||||||    
T  18341624 acctctcattg 18341634  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 14661400 - 14661339
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| |||||||||||||||||||||||||||| |||||||| || |||||    
T  14661400 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagagcagggacctcccattg 14661339  T

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Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 142
Target Start/End: Original strand, 4840508 - 4840554
Alignment:
Q  96 gagagggataactaccctcattctgtctagctttaggttttcacaat 142  Q
    ||||||||| ||||||||||||| |||||||||||| ||||||||||    
T  4840508 gagagggatgactaccctcattccgtctagctttagtttttcacaat 4840554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 15144277 - 15144327
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||| ||||||||||||||||||||||||||||||  ||||||||    
T  15144277 atgggatgacatttaaatagctaaacggctgagggcagggatctctcattg 15144327  T

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Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 17530028 - 17530089
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| |||||||| ||||||||||||||||||| |||| ||| ||||||||    
T  17530028 ttaaccgtctgatgggatgacgttgaaatagctaaacggctgagcgcagtgacctctcattg 17530089  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 670139 - 670089
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||| |||||||||||||| | || ||||||||    
T  670139 atgggatgacgtttaaatagctgaacggctgagggcatgaacctctcattg 670089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 662902 - 662857
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||||||||||| |||| |||||||||| ||| ||||||||    
T  662902 atgacgtttaaatagctgaacgactgagggcagtgacctctcattg 662857  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 267756 - 267806
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  267756 atgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 267806  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 26450921 - 26450982
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||| |||||| ||||||||    
T  26450921 ttaaccgtctgatgggatgacgtttaaatagctaaacggctgagggaagggacctctcattg 26450982  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 32517255 - 32517194
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||||| |||| ||||||||    
T  32517255 ttaaccgtctaatgggatgacgtttaaatagctaaacggctgagggcatggacctctcattg 32517194  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 129 - 218
Target Start/End: Original strand, 40771614 - 40771703
Alignment:
Q  129 taggttttcacaatactattcagaagaattaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||||| ||||| |||| ||   |||| ||||| |||| |||| ||||||||||||||||||||||||||| |||| ||||||||    
T  40771614 taggttttcaccatactgttcataatgcttaattgtctgatggaatgatgtttaaatagctaaacggctgagggcaaggacctctcattg 40771703  T

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Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 48853737 - 48853676
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||| ||||||||||||||||||||| ||||||||    
T  48853737 ttaaccgtctgatgggatgacgtttaaatagttaaacggctgagggcagggacctctcattg 48853676  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 206
Target Start/End: Original strand, 29148723 - 29148766
Alignment:
Q  163 gtctcatggtatgacgtttaaatagctaaacggctgagggcagg 206  Q
    |||| |||| ||||||||||||||||||||||||||||||||||    
T  29148723 gtctgatgggatgacgtttaaatagctaaacggctgagggcagg 29148766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 219
Target Start/End: Complemental strand, 5173001 - 5172945
Alignment:
Q  163 gtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattgt 219  Q
    |||| |||| ||||||||||||||||||||||| |||||||| | || |||||||||    
T  5173001 gtctaatgggatgacgtttaaatagctaaacggttgagggcaagaacctctcattgt 5172945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 201
Target Start/End: Original strand, 278838 - 278866
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagg 201  Q
    |||||||||||||||||||||||||||||    
T  278838 atgacgtttaaatagctaaacggctgagg 278866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 40771349 - 40771297
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggac 209  Q
    ||||| |||| |||| ||||||||||||||||||||| ||| ||||| |||||    
T  40771349 ttaaccgtctgatgggatgacgtttaaatagctaaaccgctaagggcggggac 40771297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 22729959 - 22729909
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  22729959 atgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 22729909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 35941136 - 35941181
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  35941136 atgacgtttaaatagctaaacggctgagggcagggacctctcattg 35941181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 173 - 218
Target Start/End: Original strand, 36950150 - 36950195
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||    
T  36950150 atgacgtttaaatagctaaacggctgagggcagggacctctcattg 36950195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 11339946 - 11339901
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||    
T  11339946 atgatgtttaaatagctaaacggctgagggcagggacctctcattg 11339901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 43097583 - 43097522
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||| ||||||||||||||||||||||||||||||| | ||||||    
T  43097583 ttaaccgtctgatgggatgacatttaaatagctaaacggctgagggcagggacctttcattg 43097522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 9764989 - 9765039
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  9764989 atgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 9765039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 41141010 - 41140952
Alignment:
Q  158 taactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcat 216  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  41141010 taaccgtctaatgggatgacgtttaaatagctaaacggctgagggcagggacctctcat 41140952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 47858234 - 47858184
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||||||    
T  47858234 atgggatgacgtttaaatagctaaacggctgagggcagggacctctcattg 47858184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 39574632 - 39574571
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| ||||||||||||||||||||||||| ||||||||||| ||||||||    
T  39574632 ttaaccgtctgatgggatgacgtttaaatagctaaacggctaagggcagggacctctcattg 39574571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Original strand, 12017733 - 12017785
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggac 209  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||||||||||    
T  12017733 ttaactgtctgatgggatgacgtttaaatagttaaacggctgagggcagggac 12017785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 39581165 - 39581120
Alignment:
Q  173 atgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||    
T  39581165 atgacgtttaaatagctaaacgactgagggcagggacctctcattg 39581120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 24515367 - 24515417
Alignment:
Q  168 atggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    |||| |||||||||||||||||||| |||||||||||| ||| ||||||||    
T  24515367 atgggatgacgtttaaatagctaaatggctgagggcagagacctctcattg 24515417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 9758363 - 9758424
Alignment:
Q  157 ttaactgtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcattg 218  Q
    ||||| |||| |||| |||||||||||||||||||| |||||| ||||| ||| ||||||||    
T  9758363 ttaaccgtctgatgggatgacgtttaaatagctaaatggctgaaggcagtgacctctcattg 9758424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1634 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 217
Target Start/End: Original strand, 36 - 90
Alignment:
Q  163 gtctcatggtatgacgtttaaatagctaaacggctgagggcagggacatctcatt 217  Q
    |||| |||| ||||||||||||||| ||||||||||||||||||||| |||||||    
T  36 gtctgatgggatgacgtttaaatagttaaacggctgagggcagggacctctcatt 90  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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