View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4733_low_3 (Length: 370)
Name: NF4733_low_3
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4733_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 2327193 - 2327535
Alignment:
| Q |
18 |
gaatggatacacttcttgatgcagaggttgcttccaccatcttttggaagattgtgcagcatgtcttttgcattatgaataagtcgtgctaacaacannn |
117 |
Q |
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| T |
2327193 |
gaatggatacacttcttgatgcagagcttgcttccaccatcttttggaagattgtgcagcatgtcttt-gcattatgaataagtcgtgctaacaacattt |
2327291 |
T |
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| Q |
118 |
nnnngataacactcaatttaagagaattaacccattcaaaatcatattatattatatcatatcacatttgattaaatgataagacttatcaatcaaatgg |
217 |
Q |
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| T |
2327292 |
ttttgataacactcaatttaagagaattaacccattcaaaatcatattatattatatcatatcgcatttgattaaaagataagacttatcaatcaaatgg |
2327391 |
T |
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| Q |
218 |
taaaaacaaatttgtatatgttggaaaacttgtcttactaatacaccttaaaattggagaaagcataaacttaggtgcttaactaactatataagtgaaa |
317 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2327392 |
taaaaacaaatttgtatatgttgcaaaacttgtcttactaatacaccttaaaattggacaaagcataaacttaggtgcttaactaactatataagtgaaa |
2327491 |
T |
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| Q |
318 |
agaataatgtttacgagacttatctcaaaatacaacatattcttc |
362 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
2327492 |
agaataatg-ttatgagacttatctcaaaatacaacatattcttc |
2327535 |
T |
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