View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4733_low_6 (Length: 342)

Name: NF4733_low_6
Description: NF4733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4733_low_6
NF4733_low_6
[»] scaffold0815 (1 HSPs)
scaffold0815 (1-281)||(483-761)
[»] chr6 (16 HSPs)
chr6 (169-332)||(27851150-27851313)
chr6 (173-332)||(25956602-25956760)
chr6 (169-281)||(20734188-20734300)
chr6 (169-266)||(2201133-2201230)
chr6 (169-266)||(22420981-22421078)
chr6 (257-332)||(19399853-19399928)
chr6 (169-231)||(34297010-34297072)
chr6 (286-332)||(20734158-20734204)
chr6 (286-332)||(22421062-22421108)
chr6 (169-216)||(19399822-19399869)
chr6 (286-332)||(2201214-2201260)
chr6 (170-216)||(18927888-18927934)
chr6 (286-332)||(27851297-27851343)
chr6 (286-332)||(34296980-34297026)
chr6 (169-281)||(25956744-25956856)
chr6 (254-298)||(27325487-27325531)
[»] chr4 (13 HSPs)
chr4 (170-332)||(46642816-46642977)
chr4 (173-332)||(13844521-13844679)
chr4 (169-281)||(33186101-33186213)
chr4 (169-260)||(15880717-15880808)
chr4 (194-298)||(15099353-15099457)
chr4 (170-281)||(35812231-35812342)
chr4 (194-258)||(15190360-15190424)
chr4 (286-332)||(15880792-15880838)
chr4 (257-333)||(15868765-15868839)
chr4 (170-216)||(9923361-9923407)
chr4 (170-216)||(11479452-11479498)
chr4 (286-332)||(33186197-33186243)
chr4 (284-332)||(52873249-52873296)
[»] scaffold0116 (3 HSPs)
scaffold0116 (173-332)||(43765-43923)
scaffold0116 (173-326)||(47685-47837)
scaffold0116 (169-281)||(43907-44019)
[»] chr1 (13 HSPs)
chr1 (173-332)||(28194430-28194588)
chr1 (173-332)||(43697355-43697513)
chr1 (194-298)||(49261344-49261448)
chr1 (196-298)||(20636853-20636955)
chr1 (194-298)||(35981700-35981804)
chr1 (169-281)||(51274329-51274441)
chr1 (169-243)||(12328596-12328670)
chr1 (169-220)||(8885457-8885508)
chr1 (169-219)||(51326904-51326954)
chr1 (286-332)||(8885492-8885538)
chr1 (286-332)||(51274299-51274345)
chr1 (286-332)||(12328566-12328612)
chr1 (284-332)||(43543092-43543139)
[»] chr3 (16 HSPs)
chr3 (209-332)||(18439864-18439986)
chr3 (169-281)||(31415403-31415515)
chr3 (169-281)||(31224695-31224807)
chr3 (170-293)||(12269590-12269713)
chr3 (169-281)||(15447741-15447850)
chr3 (242-332)||(20630147-20630236)
chr3 (194-298)||(1465423-1465527)
chr3 (257-332)||(49969934-49970009)
chr3 (195-291)||(49389644-49389740)
chr3 (169-280)||(11912921-11913032)
chr3 (169-242)||(6808175-6808248)
chr3 (286-332)||(6808232-6808278)
chr3 (286-332)||(11913016-11913062)
chr3 (288-332)||(31415499-31415543)
chr3 (169-281)||(49969993-49970105)
chr3 (170-216)||(40812050-40812096)
[»] scaffold0009 (1 HSPs)
scaffold0009 (209-332)||(85230-85352)
[»] chr5 (21 HSPs)
chr5 (173-332)||(5889157-5889314)
chr5 (169-281)||(12122262-12122374)
chr5 (169-281)||(21555120-21555232)
chr5 (169-281)||(21557786-21557898)
chr5 (206-291)||(21741557-21741642)
chr5 (169-266)||(24212382-24212479)
chr5 (169-281)||(31455689-31455804)
chr5 (169-280)||(17875214-17875325)
chr5 (169-280)||(36460170-36460281)
chr5 (172-277)||(30615759-30615864)
chr5 (169-281)||(31455076-31455191)
chr5 (169-266)||(35852637-35852734)
chr5 (269-332)||(29915150-29915212)
chr5 (286-332)||(12122232-12122278)
chr5 (286-332)||(24212463-24212509)
chr5 (286-332)||(35852718-35852764)
chr5 (286-332)||(36460265-36460311)
chr5 (290-332)||(31455175-31455217)
chr5 (290-332)||(31455788-31455830)
chr5 (257-298)||(21871627-21871668)
chr5 (257-298)||(21875907-21875948)
[»] scaffold0737 (2 HSPs)
scaffold0737 (169-281)||(6419-6531)
scaffold0737 (286-332)||(6389-6435)
[»] chr8 (12 HSPs)
chr8 (169-281)||(21579947-21580059)
chr8 (169-281)||(29763609-29763720)
chr8 (169-266)||(32807279-32807376)
chr8 (169-281)||(41680863-41680975)
chr8 (169-232)||(42560268-42560331)
chr8 (210-281)||(39833870-39833942)
chr8 (286-332)||(21579917-21579963)
chr8 (286-332)||(29763579-29763625)
chr8 (286-332)||(42560238-42560284)
chr8 (284-332)||(1327117-1327164)
chr8 (225-281)||(22965748-22965804)
chr8 (169-281)||(38550114-38550226)
[»] chr7 (20 HSPs)
chr7 (169-281)||(38480236-38480348)
chr7 (209-332)||(17232603-17232725)
chr7 (169-281)||(30820997-30821109)
chr7 (169-281)||(36685991-36686103)
chr7 (169-266)||(9320470-9320567)
chr7 (169-266)||(11092751-11092848)
chr7 (194-298)||(9389709-9389813)
chr7 (209-332)||(8468409-8468524)
chr7 (169-266)||(11085013-11085110)
chr7 (169-280)||(15213699-15213810)
chr7 (180-247)||(15439318-15439385)
chr7 (286-332)||(11092832-11092878)
chr7 (286-332)||(15213794-15213840)
chr7 (288-332)||(38480332-38480376)
chr7 (286-332)||(9320440-9320486)
chr7 (286-332)||(11085094-11085140)
chr7 (290-332)||(30820971-30821013)
chr7 (290-332)||(36685965-36686007)
chr7 (169-281)||(8468313-8468425)
chr7 (284-332)||(14270136-14270183)
[»] scaffold1351 (2 HSPs)
scaffold1351 (169-281)||(1565-1677)
scaffold1351 (286-332)||(1661-1707)
[»] scaffold0395 (2 HSPs)
scaffold0395 (169-281)||(10894-11006)
scaffold0395 (286-332)||(10990-11036)
[»] scaffold0071 (1 HSPs)
scaffold0071 (169-281)||(14339-14451)
[»] chr2 (15 HSPs)
chr2 (169-281)||(24865511-24865623)
chr2 (169-281)||(22500988-22501100)
chr2 (169-281)||(22508922-22509034)
chr2 (169-281)||(7672299-7672405)
chr2 (169-220)||(2524470-2524521)
chr2 (169-217)||(22501146-22501194)
chr2 (169-217)||(22509080-22509128)
chr2 (286-332)||(2524440-2524486)
chr2 (286-332)||(7672269-7672315)
chr2 (286-332)||(24865481-24865527)
chr2 (170-281)||(6576373-6576484)
chr2 (170-213)||(24436258-24436301)
chr2 (169-216)||(24883665-24883712)
chr2 (286-332)||(22501084-22501130)
chr2 (286-332)||(22509018-22509064)
[»] scaffold1137 (1 HSPs)
scaffold1137 (194-298)||(2304-2408)
[»] scaffold0599 (4 HSPs)
scaffold0599 (169-280)||(197-308)
scaffold0599 (169-280)||(4615-4726)
scaffold0599 (286-332)||(4710-4756)
scaffold0599 (286-332)||(292-338)
[»] scaffold0080 (1 HSPs)
scaffold0080 (170-281)||(59347-59458)
[»] scaffold0434 (1 HSPs)
scaffold0434 (286-332)||(6770-6816)
[»] scaffold0100 (2 HSPs)
scaffold0100 (169-216)||(36171-36218)
scaffold0100 (284-332)||(36140-36187)
[»] scaffold0075 (1 HSPs)
scaffold0075 (257-333)||(8350-8424)


Alignment Details
Target: scaffold0815 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 761 - 483
Alignment:
Q  1 cttgttgatactttgtgttcctagtgtatatagtgtgtgtatata--cgatttatgtgaagcaatttttaatatatgaggtcaaatgattatattctatt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||| ||||||||||||    
T  761 cttgttgatactttgtgttcctagtgtatatagtgtgtgtatatatacgatttatgtgaagcaatttttaatatatgagctcaaatggttatattctatt 662  T
Q  99 tccaaattaagtagtttcatatcgatgataaattataatgatgaattatttgattaaatgagaaaacatttatttatatattgtgaaagacgttaatatg 198  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||| |||||    
T  661 tccaaattaagtagtttcatatggatgataaattataatgatgaattatttgattaaatgagaaaa----tatttatatattgtgaaagacgttgatatg 566  T
Q  199 aaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgat 281  Q
    ||||| |||||||||||||||| || |||||||| |||| ||||| || ||||||| ||||||||||||||||||||||||||    
T  565 aaattataattgttatatatgatgattattattgatggtgacttgctgcatatgttaaaatgatgttgtcttgctgttgtgat 483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 332
Target Start/End: Complemental strand, 27851313 - 27851150
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaatt-gttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgt 267  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||    
T  27851313 tatttatatattgtgaaagacgttgatatgaaattgtaatttgttatatatgaagattattattgatggttacttgttgtgtatgtttaaatgatgttgt 27851214  T
Q  268 cttgctgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    |||| ||||||| | |||||||||||||||| |  || ||||||| |||||||||||||||||||    
T  27851213 cttgttgttgtgctgaatatgatttactttgatgctt-aatgtgagaatatttatatattgtgaa 27851150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 25956602 - 25956760
Alignment:
Q  173 tatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgc 272  Q
    |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  25956602 tatataatgtgaaagttgttgatatggagttgcaaatgttatatatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgc 25956701  T
Q  273 tgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| |||||||||||||||| | ||| ||||||| |||||||||||||||||||    
T  25956702 tgttgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatattgtgaa 25956760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 20734188 - 20734300
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||||| || ||||||||||||| |||||||    
T  20734188 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatggtgttgtc 20734287  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  20734288 ttgctgttgtgat 20734300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 2201230 - 2201133
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttg 266  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||||| || |||||| |||||| |||||    
T  2201230 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtctaaatggtgttg 2201133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 22421078 - 22420981
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttg 266  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| | || |||||||| |||||| |||||| |||||    
T  22421078 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatagtgacttgttgcatatgtctaaatggtgttg 22420981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 257 - 332
Target Start/End: Complemental strand, 19399928 - 19399853
Alignment:
Q  257 aatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    |||||||||||||| |||||||||| |||||| ||||||||| | ||||||||||| |||||||||||||||||||    
T  19399928 aatgatgttgtcttactgttgtgatgaatatggtttactttgatgattaaatgtgaaaatatttatatattgtgaa 19399853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 169 - 231
Target Start/End: Original strand, 34297010 - 34297072
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattatt 231  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||    
T  34297010 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattatt 34297072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 20734158 - 20734204
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  20734158 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 20734204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 22421108 - 22421062
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  22421108 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 22421062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 19399869 - 19399822
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 216  Q
    |||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  19399869 tatttatatattgtgaaagatgttgatatgaagttgtaatggttatat 19399822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 2201260 - 2201214
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||| ||| |||||||||||||||||||    
T  2201260 atgatttactttgatgattaaatatgaaaatatttatatattgtgaa 2201214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 18927934 - 18927888
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatat 216  Q
    ||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  18927934 atttatatattgtgaaagatgttgatatgaagttgtaatggttatat 18927888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 27851343 - 27851297
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| ||| | ||||||||||| |||||||||||||||||||    
T  27851343 atgatttaccttgatgattaaatgtgaaaatatttatatattgtgaa 27851297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 34296980 - 34297026
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | |||| |||||| |||||||||||||||||||    
T  34296980 atgatttactttgatgattagatgtgaaaatatttatatattgtgaa 34297026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 25956744 - 25956856
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||| | | ||||||| ||||||| ||| ||| ||| || |||| ||| || | ||||| |||| ||  ||  ||||||||| |    
T  25956744 tatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgatgattattgttgatgatgacttgctgtaaattatttgatgatgttgcc 25956843  T
Q  269 ttgctgttgtgat 281  Q
    |||||| ||||||    
T  25956844 ttgctgatgtgat 25956856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 27325487 - 27325531
Alignment:
Q  254 ttaaatgatgttgtcttgctgttgtgataaatatgatttactttg 298  Q
    |||||||||| | | ||| ||||||||||||||||||||||||||    
T  27325487 ttaaatgatgctattttgttgttgtgataaatatgatttactttg 27325531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 99; Significance: 8e-49; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 170 - 332
Target Start/End: Complemental strand, 46642977 - 46642816
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtct 269  Q
    ||||||||||||||||||  ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  46642977 atttatatattgtgaaagttgttaatatgaagttgtaattgttacatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgctgcct 46642878  T
Q  270 tgctgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    |||||||||||| ||||||||||| |||| | ||| ||||||| || ||||||| | ||||||    
T  46642877 tgctgttgtgatgaatatgatttaatttgatgatt-aatgtgagaagatttataaactgtgaa 46642816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 173 - 332
Target Start/End: Complemental strand, 13844679 - 13844521
Alignment:
Q  173 tatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgc 272  Q
    |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |    
T  13844679 tatataatgtgaaagttgttgatatggagttgcaaatgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtcttac 13844580  T
Q  273 tgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| |||||||||||||||| | ||| ||||||| |||||||||||||||||||    
T  13844579 tgttgtgatgaatatgatttactttgattatt-aatgtgagaatatttatatattgtgaa 13844521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 33186213 - 33186101
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||||| || || ||||||||||||| ||||    
T  33186213 tatttatatattatgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgacttgctgcatttgtttaaatgatgatgtc 33186114  T
Q  269 ttgctgttgtgat 281  Q
    ||| |||||||||    
T  33186113 ttgttgttgtgat 33186101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 15880808 - 15880717
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatg 260  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||||| |  |||||| ||||||    
T  15880808 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctacatatgtctaaatg 15880717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 15099457 - 15099353
Alignment:
Q  194 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgattta 293  Q
    ||||||| ||| |||||||||| || |||| ||||| || |||||||||| |||||||||||||| |||||||||||||||| || || ||||||||| |    
T  15099457 atatgaagttgaaattgttatacataaagattattaatgatggttacttgctgtatatgtttaaaagatgttgtcttgctgtcgtaatgaatatgattga 15099358  T
Q  294 ctttg 298  Q
    |||||    
T  15099357 ctttg 15099353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 35812231 - 35812342
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtct 269  Q
    ||||||||||||||||||| ||| ||||||| ||||||| |||||||  || || |||| ||| || | ||||| || ||||  |  |||||||||||||    
T  35812231 atttatatattgtgaaagatgttgatatgaagttgtaatggttatattggatgattattgttgatgttgacttgctgcatattatctaatgatgttgtct 35812330  T
Q  270 tgctgttgtgat 281  Q
    ||||||||||||    
T  35812331 tgctgttgtgat 35812342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 258
Target Start/End: Complemental strand, 15190424 - 15190360
Alignment:
Q  194 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaa 258  Q
    ||||||| ||| |||||||||| ||||||| ||||| || |||||||||| ||||||||||||||    
T  15190424 atatgaagttgaaattgttatacatgaagattattaatgatggttacttgctgtatatgtttaaa 15190360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 15880838 - 15880792
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  15880838 atgatttactttgattattaaatgtgaaaatatttatatattgtgaa 15880792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 15868765 - 15868839
Alignment:
Q  257 aatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaat 333  Q
    ||||||||||| ||| ||||||||| |||||||||||||||| | ||| |||| || |||| |||||||||||||||    
T  15868765 aatgatgttgttttgttgttgtgatgaatatgatttactttgatgatt-aatgagagaata-ttatatattgtgaat 15868839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 9923407 - 9923361
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatat 216  Q
    ||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  9923407 atttatatattgtgaaagatgttgatatgaagttgtaatggttatat 9923361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Original strand, 11479452 - 11479498
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatat 216  Q
    ||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  11479452 atttatatattgtgaaagatgttgatatgaagttgtaatggttatat 11479498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 33186243 - 33186197
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||| ||||    
T  33186243 atgatttactttgatgattaaatgtgaaaatatttatatattatgaa 33186197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 52873249 - 52873296
Alignment:
Q  284 atatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||||||    
T  52873249 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaa 52873296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 43765 - 43923
Alignment:
Q  173 tatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgc 272  Q
    |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  43765 tatataatgtgaaagttgttgatatggagttgcaaatgttatatatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgc 43864  T
Q  273 tgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| |||||||||||||||| | ||| ||||||| |||||||||||||||||||    
T  43865 tgttgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatattgtgaa 43923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 173 - 326
Target Start/End: Original strand, 47685 - 47837
Alignment:
Q  173 tatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgc 272  Q
    |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  47685 tatataatgtgaaagttgttgatatgtagttgcaaatgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtcttgc 47784  T
Q  273 tgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatat 326  Q
    ||||||||| |||||||||||||||| | ||| ||||||| |||||||||||||    
T  47785 tgttgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatat 47837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 43907 - 44019
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||| | | ||||||| ||||||| ||| ||| ||| || |||| ||| || | ||||| |||| ||  ||  ||||||||| |    
T  43907 tatttatatattgtgaaagatgctgatatgaagttgtaatggttgtatttgatgattattgttgatgatgacttgctgtaaattatttgatgatgttgcc 44006  T
Q  269 ttgctgttgtgat 281  Q
    |||||| ||||||    
T  44007 ttgctgatgtgat 44019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 28194430 - 28194588
Alignment:
Q  173 tatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgc 272  Q
    |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||||    
T  28194430 tatataatgtgaaagttgttgatatgtagttgcaaatgttatatatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgc 28194529  T
Q  273 tgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| |||||||||||||||| | ||| ||||||| |||||||||||||||||||    
T  28194530 tgttgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatattgtgaa 28194588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 332
Target Start/End: Complemental strand, 43697513 - 43697355
Alignment:
Q  173 tatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgc 272  Q
    |||||| ||||||||  ||| ||||| | ||| || ||||||||||||||| |||||||| |||||||||| |||||||||||| |||||| ||||||||    
T  43697513 tatatagtgtgaaagttgttgatatggagttgcaaatgttatatatgaagattattattgttggttacttgctgtatatgtttatatgatgctgtcttgc 43697414  T
Q  273 tgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    |||||||||||||||||||||||||| | ||| ||||||| | |||| ||||||||||||    
T  43697413 tgttgtgataaatatgatttactttgatgatt-aatgtgagattattgatatattgtgaa 43697355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 298
Target Start/End: Complemental strand, 49261448 - 49261344
Alignment:
Q  194 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgattta 293  Q
    ||||||| |||||||||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||  ||||||||||| ||||| |||||||||||    
T  49261448 atatgaagttgtaattgttatacatgaagattattattgatggttacttgttatatatgtttaaatgatactgtcttgctgtcgtgatgaatatgattta 49261349  T
Q  294 ctttg 298  Q
    |||||    
T  49261348 ctttg 49261344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 196 - 298
Target Start/End: Complemental strand, 20636955 - 20636853
Alignment:
Q  196 atgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgatttact 295  Q
    ||||| |||||||||||||| ||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||| ||    
T  20636955 atgaagttgtaattgttatacatgaatattattattgatggttacttgctgtatatgtttaaatgatgttgtcttgctgtcgtgatgaatatgattttct 20636856  T
Q  296 ttg 298  Q
    |||    
T  20636855 ttg 20636853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 35981700 - 35981804
Alignment:
Q  194 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgattta 293  Q
    ||||||| ||| |||||||  | ||||||| || || || |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |    
T  35981700 atatgaagttgaaattgttgcacatgaagattactaatgatggttacttgttgtatatgtttaaatgatgttgtcttgctgtcgtgatgaatatgattga 35981799  T
Q  294 ctttg 298  Q
    |||||    
T  35981800 ctttg 35981804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 51274329 - 51274441
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||| || || |||||||| |||| ||||| || ||||||||||||| | ||||     
T  51274329 tatttatatattgtgaaagatgttgatatgaagttgtaattgttatataagatgattattattgatggtgacttgatgcatatgtttaaatgtttttgtt 51274428  T
Q  269 ttgctgttgtgat 281  Q
    ||| |||||||||    
T  51274429 ttgttgttgtgat 51274441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 243
Target Start/End: Original strand, 12328596 - 12328670
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttg 243  Q
    |||||||||||||||||||||||| |||||||  |||||||||||||||||| || |||||||| |||| |||||    
T  12328596 tatttatatattgtgaaagacgttgatatgaagatgtaattgttatatatgatgattattattgatggtgacttg 12328670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 8885508 - 8885457
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatga 220  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  8885508 tatttatatattgtgaaagacgttgatatgaaattgtaattgtaatatatga 8885457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 51326954 - 51326904
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatg 219  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||||||||||    
T  51326954 tatttatatattatgaaagacgttgatatgaagttgtaattgttatatatg 51326904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 8885538 - 8885492
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  8885538 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 8885492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 51274299 - 51274345
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  51274299 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 51274345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 12328566 - 12328612
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||| ||| |||||||||||||||||||    
T  12328566 atgatttactttgatgattaaatttgaaaatatttatatattgtgaa 12328612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 43543139 - 43543092
Alignment:
Q  284 atatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||||||    
T  43543139 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaa 43543092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 209 - 332
Target Start/End: Original strand, 18439864 - 18439986
Alignment:
Q  209 tgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaat 308  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| |||    
T  18439864 tgttatatatgaagattattattgatggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgatgaatatgatttactttgatgatt-aat 18439962  T
Q  309 gtgacaatatttatatattgtgaa 332  Q
    |||| ||||| |||||||||||||    
T  18439963 gtgagaatatctatatattgtgaa 18439986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 31415515 - 31415403
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||||| || |||||||||||||||||||||    
T  31415515 tatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 31415416  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  31415415 ttgctgttgtgat 31415403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 31224695 - 31224807
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||||| || |||||||||||||||||||||    
T  31224695 tatttatataatgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 31224794  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  31224795 ttgctgttgtgat 31224807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 170 - 293
Target Start/End: Complemental strand, 12269713 - 12269590
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtct 269  Q
    ||||||||||||||||||  ||| ||||||| ||||| || ||| |||||||||||||||| |||||||||||||||||||||||||||||||| || ||    
T  12269713 atttatatattgtgaaagttgttgatatgaagttgtattttttacatatgaagaatattatcggtggttacttgttgtatatgtttaaatgatgctgcct 12269614  T
Q  270 tgctgttgtgataaatatgattta 293  Q
    ||||||||| || |||||||||||    
T  12269613 tgctgttgtcatgaatatgattta 12269590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 15447741 - 15447850
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||| ||||| ||||||||||||| ||||||| |||||||||||||||||||    |||||||| |||| ||||| || |||||||||||||||||||||    
T  15447741 tattcatataatgtgaaagacgttgatatgaagttgtaattgttatatatgat---tattattgatggtgacttgatgcatatgtttaaatgatgttgtc 15447837  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  15447838 ttgctgttgtgat 15447850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 242 - 332
Target Start/End: Original strand, 20630147 - 20630236
Alignment:
Q  242 tgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||   ||| ||||||| |||||||||||||||||||    
T  20630147 tgttgtatatgtttaaatgatgttgtcttgctgttgtaatgaatatgatttactttgacgatt-aatgtgagaatatttatatattgtgaa 20630236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 1465423 - 1465527
Alignment:
Q  194 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgattta 293  Q
    ||||||| ||| |||||||||| ||||||| ||||| || |||||||||| | ||||||||||||||||||||||||||||  ||||| ||||||||| |    
T  1465423 atatgaagttgaaattgttatacatgaagattattaatgatggttacttgctctatatgtttaaatgatgttgtcttgctgccgtgatgaatatgattga 1465522  T
Q  294 ctttg 298  Q
    |||||    
T  1465523 ctttg 1465527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 257 - 332
Target Start/End: Original strand, 49969934 - 49970009
Alignment:
Q  257 aatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    |||||||||||||| |||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||||||    
T  49969934 aatgatgttgtcttcctgttgtgatgaatatgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 49970009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 49389644 - 49389740
Alignment:
Q  195 tatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgatt 291  Q
    |||||| ||| |||||||||| |||||||  ||||||  ||| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||    
T  49389644 tatgaagttgaaattgttatacatgaagatcattattaatgggtacttattgtatatgtttaaatgatgttgtcttgctgtcgtgatgaatatgatt 49389740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 11913032 - 11912921
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||| || | ||||| || ||||  || |||| ||||| |    
T  11913032 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgattattattattgatgttgacttgatgcatattatttaatggtgttgcc 11912933  T
Q  269 ttgctgttgtga 280  Q
    |||| |||||||    
T  11912932 ttgcggttgtga 11912921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 6808248 - 6808175
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttactt 242  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| | || |||||||| |||| ||||    
T  6808248 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatataatgattattattgatggtgactt 6808175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 6808278 - 6808232
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  6808278 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 6808232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 11913062 - 11913016
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  11913062 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 11913016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 31415543 - 31415499
Alignment:
Q  288 gatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||    
T  31415543 gatttactttgatgattaaatgtgaaaatatttatatattgtgaa 31415499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 49969993 - 49970105
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||||||| ||| || |||| ||| || | ||||| || ||||  || |||| |  || |    
T  49969993 tatttatatattgtgaaagatgttgatatgaagttgtaatggttatatttgatgattattgttgatgttgacttgctgcatattatttaatggtactgcc 49970092  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  49970093 ttgctgttgtgat 49970105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 216
Target Start/End: Complemental strand, 40812096 - 40812050
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatat 216  Q
    ||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  40812096 atttatatattgtgaaagatgttgatatgaagttgtaatggttatat 40812050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 84; Significance: 7e-40; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 209 - 332
Target Start/End: Complemental strand, 85352 - 85230
Alignment:
Q  209 tgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaat 308  Q
    ||||||||||||||| |||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||| | ||| |||    
T  85352 tgttatatatgaagattattattgatggttacttgatgtatatgtttaaatgaagttgtcttgctgttgtgatgaatatgatttactttgatgatt-aat 85254  T
Q  309 gtgacaatatttatatattgtgaa 332  Q
    |||| |||||||||||||||||||    
T  85253 gtgagaatatttatatattgtgaa 85230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 173 - 332
Target Start/End: Original strand, 5889157 - 5889314
Alignment:
Q  173 tatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgc 272  Q
    |||||| ||||||||  ||| ||||| | ||| |||||||||| ||||||| |||||||| |||||||||| |||||||||||||||||||||||||| |    
T  5889157 tatataatgtgaaagttgttgatatgtagttgcaattgttatacatgaagattattattgatggttacttgctgtatatgtttaaatgatgttgtctt-c 5889255  T
Q  273 tgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||| ||||| |||||||||||||||| | ||| ||||||| |||||||||||||||||||    
T  5889256 tgtcgtgatgaatatgatttactttgatgatt-aatgtgagaatatttatatattgtgaa 5889314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 12122262 - 12122374
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||| |||||  | |||||||||||||||| ||||    
T  12122262 tatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgacttgcggcatatgtttaaatgatgatgtc 12122361  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  12122362 ttgctgttgtgat 12122374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 21555120 - 21555232
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| | || || ||||||||||||||||||| || |||||||| |||| ||||| || |||||||||||||||||||||    
T  21555120 tatttatatattgtgaaagacgttgacataaagttgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 21555219  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  21555220 ttgctgttgtgat 21555232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 21557786 - 21557898
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||| | || ||||| || |||||||||||||||||||||    
T  21557786 tatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatagtgacttgctgcatatgtttaaatgatgttgtc 21557885  T
Q  269 ttgctgttgtgat 281  Q
    |||||||| ||||    
T  21557886 ttgctgttatgat 21557898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 206 - 291
Target Start/End: Original strand, 21741557 - 21741642
Alignment:
Q  206 aattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgatt 291  Q
    |||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||| |||||  ||||||||    
T  21741557 aattgttatacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgttgtcttgctgtcgtgatgtatatgatt 21741642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 24212479 - 24212382
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttg 266  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || || ||||| |||| ||||| || |||||| ||||||||||||    
T  24212479 tatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattaatattgatggtgacttgctgcatatgtctaaatgatgttg 24212382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 31455804 - 31455689
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaa---gaatattattggtggttacttgttgtatatgtttaaatgatgtt 265  Q
    |||||||||||||||||| ||||| ||||||| ||||||| |||||| ||||    || |||||||| |||| ||||| || ||||||||||||||||||    
T  31455804 tatttatatattgtgaaaaacgttgatatgaagttgtaatcgttataaatgatattgattattattgatggtgacttgctgcatatgtttaaatgatgtt 31455705  T
Q  266 gtcttgctgttgtgat 281  Q
    ||||||||||||||||    
T  31455704 gtcttgctgttgtgat 31455689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 17875325 - 17875214
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||| ||  ||||||||| ||||||| || |||||||||||||||| || |||||||| |||| ||||| || ||||||||||||||| || ||    
T  17875325 tatttatataatgataaagacgttgatatgaagttctaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatattatc 17875226  T
Q  269 ttgctgttgtga 280  Q
    ||||||||||||    
T  17875225 ttgctgttgtga 17875214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 36460281 - 36460170
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||  || | ||||| || ||||  || |||| |||||||    
T  36460281 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattaatgttgacttgctgcatattatttaatggtgttgtc 36460182  T
Q  269 ttgctgttgtga 280  Q
    |||| |||||||    
T  36460181 ttgcggttgtga 36460170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 172 - 277
Target Start/End: Complemental strand, 30615864 - 30615759
Alignment:
Q  172 ttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttg 271  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||  ||| || ||||| || |||| ||||| || ||||||||||| |||| |||||||    
T  30615864 ttatatattgtgaaagacgttgatatgaagttgtaattgttataattgatgattattaatgatggtgacttgctgcatatgtttaaacgatgatgtcttg 30615765  T
Q  272 ctgttg 277  Q
    ||||||    
T  30615764 ctgttg 30615759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 31455191 - 31455076
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaa---gaatattattggtggttacttgttgtatatgtttaaatgatgtt 265  Q
    |||||||||||||||||| ||||| |||| || ||||||| |||||| ||||    || |||||||| |||| ||||| || ||||||||||||||||||    
T  31455191 tatttatatattgtgaaaaacgttgatattaagttgtaatcgttataaatgatattgattattattgatggtgacttgatgcatatgtttaaatgatgtt 31455092  T
Q  266 gtcttgctgttgtgat 281  Q
    ||||||||||||||||    
T  31455091 gtcttgctgttgtgat 31455076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 35852734 - 35852637
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttg 266  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| || || |||||||| ||||  |||| || |||||| |||||| |||||    
T  35852734 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatacgatgattattattgatggtggcttgctgcatatgtctaaatggtgttg 35852637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 269 - 332
Target Start/End: Original strand, 29915150 - 29915212
Alignment:
Q  269 ttgctgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| |||||||| ||||||| | ||||| ||||| |||||||||||||||||||    
T  29915150 ttgctgttgtgatgaatatgatctactttgatgattaa-tgtgagaatatttatatattgtgaa 29915212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 12122232 - 12122278
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  12122232 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 12122278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 24212509 - 24212463
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  24212509 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 24212463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 35852764 - 35852718
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  35852764 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 35852718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 36460311 - 36460265
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  36460311 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 36460265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 31455217 - 31455175
Alignment:
Q  290 tttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| | ||||||||||| |||||||||||||||||||    
T  31455217 tttactttgatgattaaatgtgaaaatatttatatattgtgaa 31455175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Complemental strand, 31455830 - 31455788
Alignment:
Q  290 tttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| | ||||||||||| |||||||||||||||||||    
T  31455830 tttactttgatgattaaatgtgaaaatatttatatattgtgaa 31455788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 21871627 - 21871668
Alignment:
Q  257 aatgatgttgtcttgctgttgtgataaatatgatttactttg 298  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  21871627 aatgatgctgtcttgttgttgtgatgaatatgatttactttg 21871668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 298
Target Start/End: Original strand, 21875907 - 21875948
Alignment:
Q  257 aatgatgttgtcttgctgttgtgataaatatgatttactttg 298  Q
    ||||||| ||||||| ||||||||| ||||||||||||||||    
T  21875907 aatgatgctgtcttgttgttgtgatgaatatgatttactttg 21875948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 6419 - 6531
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||||| || ||||||||||||| |||||||    
T  6419 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatggtgttgtc 6518  T
Q  269 ttgctgttgtgat 281  Q
    ||||| |||||||    
T  6519 ttgctattgtgat 6531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0737; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 6389 - 6435
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  6389 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 6435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 21579947 - 21580059
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||||  | |||||||| |||| ||||| || |||||||||||||||||||||    
T  21579947 tatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgataattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 21580046  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  21580047 ttgctgttgtgat 21580059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 29763609 - 29763720
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||| | |||| | ||| || |||||||||||||||| ||||    
T  29763609 tatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattatcgatggtga-ttgctgcatatgtttaaatgatgatgtc 29763707  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  29763708 ttgctgttgtgat 29763720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 32807376 - 32807279
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttg 266  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||||| || |||||| |||||| |||||    
T  32807376 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtctaaatggtgttg 32807279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 41680863 - 41680975
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    ||||||||||||||||||||  || |||| |||||||||||||||||||||| || |||||||| |||| ||||| || ||||||||||||| || ||||    
T  41680863 tatttatatattgtgaaagatattgatatcaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatggtgatgtc 41680962  T
Q  269 ttgctgttgtgat 281  Q
    ||| |||||||||    
T  41680963 ttgttgttgtgat 41680975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 169 - 232
Target Start/End: Original strand, 42560268 - 42560331
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattg 232  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||| || ||||||||    
T  42560268 tatttatatattgtgaaatacgttgatatgaaattgtaattgttatatatgatgattattattg 42560331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 281
Target Start/End: Complemental strand, 39833942 - 39833870
Alignment:
Q  210 gttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatg-ttgtcttgctgttgtgat 281  Q
    |||||||||||||| |||||||| |||||||| | ||||||||||||||||||| ||| ||||||| ||||||    
T  39833942 gttatatatgaagattattattgatggttactcgctgtatatgtttaaatgatgattgccttgctgatgtgat 39833870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 21579917 - 21579963
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  21579917 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 21579963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 29763579 - 29763625
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  29763579 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 29763625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 42560238 - 42560284
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  42560238 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 42560284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 1327117 - 1327164
Alignment:
Q  284 atatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||||||    
T  1327117 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaa 1327164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 22965804 - 22965748
Alignment:
Q  225 tattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgat 281  Q
    |||||||| |||| | ||| || ||||||||||||| ||||||||||||||| ||||    
T  22965804 tattattgatggtgatttgatgcatatgtttaaatggtgttgtcttgctgttatgat 22965748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 38550114 - 38550226
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||| |||  || || |||| ||| || | ||||| |||| ||  ||  ||| |||||||    
T  38550114 tatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgattattgttgatgttgacttgctgtaaattatttgatggtgttgtc 38550213  T
Q  269 ttgctgttgtgat 281  Q
    |||||| ||||||    
T  38550214 ttgctgatgtgat 38550226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 38480348 - 38480236
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||||| || |||| ||||||||||||||||    
T  38480348 tatttatatattgtgaaagacgttgatatgaagttgtaattgttatatatgatgattattattgatggtgacttgctgcatatatttaaatgatgttgtc 38480249  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  38480248 ttgctgttgtgat 38480236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 209 - 332
Target Start/End: Complemental strand, 17232725 - 17232603
Alignment:
Q  209 tgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaat 308  Q
    ||||| ||||||||| ||||| || |||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| | ||| |||    
T  17232725 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgatgatgtcatgctgttgtgatgaatatgatttactttgatgatt-aat 17232627  T
Q  309 gtgacaatatttatatattgtgaa 332  Q
    |||| |||||||||||||||||||    
T  17232626 gtgagaatatttatatattgtgaa 17232603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 30820997 - 30821109
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||||||||||| || |||||||| |||| ||||| || |||||||||||||||||||||    
T  30820997 tatttatatattgtgaaatacgttgatatgaagttgtaattgttatatatgatgattattattgatggtaacttgctgcatatgtttaaatgatgttgtc 30821096  T
Q  269 ttgctgttgtgat 281  Q
    ||| |||||||||    
T  30821097 ttgttgttgtgat 30821109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 36685991 - 36686103
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||| | ||||||| || |||||||||||||||| || |||||||| |||| ||||| || |||||||||||||||||||||    
T  36685991 tatttatatattgtgaaagacgctgatatgaagttttaattgttatatatgatgattattattgatggtgacttgctgcatatgtttaaatgatgttgtc 36686090  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  36686091 ttgctgttgtgat 36686103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 9320470 - 9320567
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttg 266  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| |||||||| |||||| |||||| |||||    
T  9320470 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgttgcatatgtctaaatggtgttg 9320567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 11092848 - 11092751
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttg 266  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||| |||| |||||||| ||| ||||||||| |||||    
T  11092848 tatttatatattgtgaaagatgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgttgcatacgtttaaatggtgttg 11092751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 9389709 - 9389813
Alignment:
Q  194 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgattta 293  Q
    ||||||| ||| ||||| |||| ||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||| |    
T  9389709 atatgaagttgaaattgatatacatgaagattattaatgatggttacttgctgtatatgtttaaatgatgttgtcttgctgtcgtgatgaatatgattga 9389808  T
Q  294 ctttg 298  Q
    |||||    
T  9389809 ctttg 9389813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 209 - 332
Target Start/End: Complemental strand, 8468524 - 8468409
Alignment:
Q  209 tgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaat 308  Q
    ||||| ||||||||| ||||| || |||||||||||||||||||||||||||||       |||||||||||| |||||||||||||||| | ||| |||    
T  8468524 tgttacatatgaagattattaatgatggttacttgttgtatatgtttaaatgat-------tgctgttgtgatgaatatgatttactttgatgatt-aat 8468433  T
Q  309 gtgacaatatttatatattgtgaa 332  Q
    |||| |||||||||||||||||||    
T  8468432 gtgataatatttatatattgtgaa 8468409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 169 - 266
Target Start/End: Complemental strand, 11085110 - 11085013
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttg 266  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||| |||| ||||| || ||| | ||||||| |||||    
T  11085110 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgatgattattattgatggtgacttgctgcatacgattaaatggtgttg 11085013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 15213810 - 15213699
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||||| || | ||||| || ||||  || |||| ||||| |    
T  15213810 tatttatatattgtgaaagacattgatatgaaattgtaattgttatatatgatgattattattgatgttgacttgctgcatattatttaatggtgttgcc 15213711  T
Q  269 ttgctgttgtga 280  Q
    |||| |||||||    
T  15213710 ttgcggttgtga 15213699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 15439385 - 15439318
Alignment:
Q  180 tgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgt 247  Q
    ||||||||  ||| ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||    
T  15439385 tgtgaaagttgttgatatgaagttgtaattgttatatatgaagattattattgatggttacttgttgt 15439318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 11092878 - 11092832
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  11092878 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 11092832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 15213840 - 15213794
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  15213840 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 15213794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 38480376 - 38480332
Alignment:
Q  288 gatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||| | ||||||||||| |||||||||||||||||||    
T  38480376 gatttactttgatgattaaatgtgaaaatatttatatattgtgaa 38480332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 9320440 - 9320486
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    |||||||| |||| | ||||||||||| |||||||||||||||||||    
T  9320440 atgatttattttgatgattaaatgtgaaaatatttatatattgtgaa 9320486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 11085140 - 11085094
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| | |||||||||||||||||    
T  11085140 atgatttactttgatgattaaatgtgaaactatttatatattgtgaa 11085094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 30820971 - 30821013
Alignment:
Q  290 tttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| | ||||||||||| |||||||||||||||||||    
T  30820971 tttactttgatgattaaatgtgaaaatatttatatattgtgaa 30821013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 290 - 332
Target Start/End: Original strand, 36685965 - 36686007
Alignment:
Q  290 tttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||| | ||||||||||| |||||||||||||||||||    
T  36685965 tttactttgatgattaaatgtgaaaatatttatatattgtgaa 36686007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 8468425 - 8468313
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||| |||  || || |||| ||| || | ||||| |||| ||  || |||| ||||| |    
T  8468425 tatttatatattgtgaaagatgttgatatgaagttgtaatggttgtattagatgattattgttgatgttgacttgctgtaaattatttaatggtgttgcc 8468326  T
Q  269 ttgctgttgtgat 281  Q
    |||||| ||||||    
T  8468325 ttgctgatgtgat 8468313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 14270136 - 14270183
Alignment:
Q  284 atatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||||||    
T  14270136 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaa 14270183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: scaffold1351
Description:

Target: scaffold1351; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 1677 - 1565
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||| || || |||||||| |||| ||||| || |||||||||||||||||||||    
T  1677 tatttatatattgtgaaagacgttgatatgaagttgtaattgttatataagatgattattattgatggtgacttgatgcatatgtttaaatgatgttgtc 1578  T
Q  269 ttgctgttgtgat 281  Q
    ||| |||||||||    
T  1577 ttgttgttgtgat 1565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1351; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 1707 - 1661
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  1707 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 1661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 11006 - 10894
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||||||| || |||||||| | || ||||| || |||||||||||||||||||||    
T  11006 tatttatatattgtgaaagacgttgatatgaatttttaattgttatatatgatgattattattgattgtgacttgctgcatatgtttaaatgatgttgtc 10907  T
Q  269 ttgctgttgtgat 281  Q
    |||||||| ||||    
T  10906 ttgctgttttgat 10894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 11036 - 10990
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    |||||||||| || | ||||||||||| |||||||||||||||||||    
T  11036 atgatttactatgatgattaaatgtgaaaatatttatatattgtgaa 10990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 14451 - 14339
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||| ||||| ||||||||||||| ||||||| |||||||||||||||| || || |||||||| |||| ||||| || |||||||||||||||||||||    
T  14451 tattcatataatgtgaaagacgttgatatgaagttgtaattgttatataagatgattattattgatggtgacttgatgcatatgtttaaatgatgttgtc 14352  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  14351 ttgctgttgtgat 14339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 24865511 - 24865623
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||| ||| ||||||| |||||||||||||||| || || |||||||| |||| ||||| || |||||||||||||||||||||    
T  24865511 tatttatatattgtgaaagatgttgatatgaagttgtaattgttatataagatgattattattgatggtgacttgatgcatatgtttaaatgatgttgtc 24865610  T
Q  269 ttgctgttgtgat 281  Q
    ||||| |||||||    
T  24865611 ttgctattgtgat 24865623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 22501100 - 22500988
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||| || || || ||||| |||| ||||| || |||||||||||||||| ||||    
T  22501100 tatttatataatgtgaaagacgttgatatgaagttgtaattgttatataagatgattaatattgatggtaacttgctgcatatgtttaaatgatgctgtc 22501001  T
Q  269 ttgctgttgtgat 281  Q
    ||||| |||||||    
T  22501000 ttgctattgtgat 22500988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 169 - 281
Target Start/End: Complemental strand, 22509034 - 22508922
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||| || || || ||||| |||| ||||| || |||||||||||||||| ||||    
T  22509034 tatttatataatgtgaaagacgttgatatgaagttgtaattgttatataagatgattaatattgatggtaacttgctgcatatgtttaaatgatgctgtc 22508935  T
Q  269 ttgctgttgtgat 281  Q
    ||||| |||||||    
T  22508934 ttgctattgtgat 22508922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 169 - 281
Target Start/End: Original strand, 7672299 - 7672405
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| ||||||| ||||      |||||| || || |||||||| |||| ||||| || ||| |||||||||||| ||||    
T  7672299 tatttatatattgtgaaagacgttgatatgaagttgt------tatataagatgattattattgatggtgacttgatgcatacgtttaaatgatgctgtc 7672392  T
Q  269 ttgctgttgtgat 281  Q
    |||||||||||||    
T  7672393 ttgctgttgtgat 7672405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 2524470 - 2524521
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatga 220  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| ||||||    
T  2524470 tatttatatattgtgaaagacgttgatatcaaattgtaattgttacatatga 2524521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 22501194 - 22501146
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatata 217  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  22501194 tatttatataatgtgaaagacgttgatatgaagttgtaattgttatata 22501146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 22509128 - 22509080
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatata 217  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  22509128 tatttatataatgtgaaagacgttgatatgaagttgtaattgttatata 22509080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 2524440 - 2524486
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  2524440 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 2524486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 7672269 - 7672315
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  7672269 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 7672315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 24865481 - 24865527
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  24865481 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 24865527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 281
Target Start/End: Complemental strand, 6576484 - 6576373
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtct 269  Q
    ||||||||||||||||||| ||| ||||||| ||||||| ||||||| ||| || |||| ||| || | ||||| || ||||  || |||| || || ||    
T  6576484 atttatatattgtgaaagatgttgatatgaagttgtaatggttatatttgatgattattgttgatgttgacttgctgcatattatttaatggtgctgcct 6576385  T
Q  270 tgctgttgtgat 281  Q
    |||| |||||||    
T  6576384 tgctattgtgat 6576373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 213
Target Start/End: Complemental strand, 24436301 - 24436258
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgtta 213  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||    
T  24436301 atttatatattgtgaaagatgttgatatgaaattgtaatggtta 24436258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Complemental strand, 24883712 - 24883665
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 216  Q
    |||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  24883712 tatttatatattgtgaaagatgttgatatgaagttgtaatggttatat 24883665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 22501130 - 22501084
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||| ||||||    
T  22501130 atgatttactttgatgattaaatgtgaaaatatttatataatgtgaa 22501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 22509064 - 22509018
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||| ||||||    
T  22509064 atgatttactttgatgattaaatgtgaaaatatttatataatgtgaa 22509018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1137 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 194 - 298
Target Start/End: Original strand, 2304 - 2408
Alignment:
Q  194 atatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtcttgctgttgtgataaatatgattta 293  Q
    ||||||| ||| ||||||| || ||||||| ||||| || |||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |    
T  2304 atatgaagttgaaattgttgtacatgaagattattaatgatggttacttgttgtatatgtttaaatgatgctgtcttgctgtcgtgatgaatatgattga 2403  T
Q  294 ctttg 298  Q
    |||||    
T  2404 ctttg 2408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 308 - 197
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||| || | ||||| || ||||  || |||| ||||| |    
T  308 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgattattattattgatgttgacttgatgcatattatttaatggtgttgcc 209  T
Q  269 ttgctgttgtga 280  Q
    |||| |||||||    
T  208 ttgcggttgtga 197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 169 - 280
Target Start/End: Complemental strand, 4726 - 4615
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtc 268  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||  | |||||||| || | ||||| || ||||  || |||| ||||| |    
T  4726 tatttatatattgtgaaagacgttgatatgaaattgtaattgttatatatgattattattattgatgttgacttgatgcatattatttaatggtgttgcc 4627  T
Q  269 ttgctgttgtga 280  Q
    |||| |||||||    
T  4626 ttgcggttgtga 4615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 4756 - 4710
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  4756 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 4710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 332
Target Start/End: Complemental strand, 338 - 292
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | |||| |||||| |||||||||||||||||||    
T  338 atgatttactttgatgattatatgtgaaaatatttatatattgtgaa 292  T

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Target: scaffold0080 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 281
Target Start/End: Original strand, 59347 - 59458
Alignment:
Q  170 atttatatattgtgaaagacgttaatatgaaattgtaattgttatatatgaagaatattattggtggttacttgttgtatatgtttaaatgatgttgtct 269  Q
    ||||||||||||||||||| ||| ||||||| |||||||||||||||  || || |||| ||| || | ||||| || |||| ||| |||| ||||| ||    
T  59347 atttatatattgtgaaagatgttgatatgaagttgtaattgttatattggatgattattgttgatgttgacttgctgcatattttttaatggtgttgcct 59446  T
Q  270 tgctgttgtgat 281  Q
    |||||| |||||    
T  59447 tgctgtcgtgat 59458  T

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Target: scaffold0434 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 286 - 332
Target Start/End: Original strand, 6770 - 6816
Alignment:
Q  286 atgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||| | ||||||||||| |||||||||||||||||||    
T  6770 atgatttactttgatgattaaatgtgaaaatatttatatattgtgaa 6816  T

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Target: scaffold0100 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 216
Target Start/End: Original strand, 36171 - 36218
Alignment:
Q  169 tatttatatattgtgaaagacgttaatatgaaattgtaattgttatat 216  Q
    |||||||||||||||||||| ||| ||||||| ||||||| |||||||    
T  36171 tatttatatattgtgaaagatgttgatatgaagttgtaatggttatat 36218  T

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Target: scaffold0100; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 36140 - 36187
Alignment:
Q  284 atatgatttactttgctaattaaatgtgacaatatttatatattgtgaa 332  Q
    ||||||||||||||| | ||||| ||||| |||||||||||||||||||    
T  36140 atatgatttactttgatgattaa-tgtgagaatatttatatattgtgaa 36187  T

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Target: scaffold0075 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 333
Target Start/End: Original strand, 8350 - 8424
Alignment:
Q  257 aatgatgttgtcttgctgttgtgataaatatgatttactttgctaattaaatgtgacaatatttatatattgtgaat 333  Q
    ||||||| ||||||| ||| ||||| |||||||||||||||| | ||| |||| || |||| |||||||||||||||    
T  8350 aatgatgctgtcttgttgtcgtgatgaatatgatttactttgatgatt-aatgagagaata-ttatatattgtgaat 8424  T

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