View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734-Insertion-11 (Length: 343)
Name: NF4734-Insertion-11
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734-Insertion-11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 343
Target Start/End: Original strand, 299137 - 299472
Alignment:
| Q |
7 |
agaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaagattatgcctccttatat |
106 |
Q |
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| T |
299137 |
agaaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaagattatgcctcctcatat |
299236 |
T |
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| Q |
107 |
gaagttttgtttggaatatttttatttgttgaagactaatgcctgggttaatttaggtacatgtacaaatgttttagatggattactaactggtttcccc |
206 |
Q |
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| T |
299237 |
gaagttttgtttggaatatttttatctgctgaagactaatgcctgggttaatttaggtacatgtacaaatgttttagatggattactaactggtttcccc |
299336 |
T |
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| Q |
207 |
tttcctttcaacagcttcagatttttctgtggggcaatttcagtttttgnnnnnnntcacttttggttcatgggcacttgaattatcagtatgttgttta |
306 |
Q |
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| T |
299337 |
tttcctttcaacagcttcagatttttctgtggcgcaatttcagtttttg-aaaaaatcacttttggttcatgggcacttgaattatcagtatgttgttta |
299435 |
T |
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| Q |
307 |
tttagttttgtataatttagcttctaacacaatgctg |
343 |
Q |
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| T |
299436 |
tttagttttgtataatttagcttctaacacaatgctg |
299472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 220
Target Start/End: Original strand, 301302 - 301514
Alignment:
| Q |
9 |
aaacactactccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaagattatgcctccttatatg- |
107 |
Q |
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| T |
301302 |
aaacactactccattggcactcataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttctttatatga |
301401 |
T |
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| Q |
108 |
aagttttgtttggaatatttttat-ttgttgaagactaatgcctgggttaatttaggtacatgtacaaatgttttagatggattactaactggtttcccc |
206 |
Q |
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| T |
301402 |
aatttttgtttgaaatatttttatattttggaaaactaatgcttgggttaattt-ggtgcatattcaactgttttagattgaatactaactagtttacca |
301500 |
T |
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| Q |
207 |
tttcctttcaacag |
220 |
Q |
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| T |
301501 |
tctcctttcaacag |
301514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 27465193 - 27465123
Alignment:
| Q |
18 |
tccattggcgctcataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaa |
88 |
Q |
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| T |
27465193 |
tccattggcactcataattgatgggaatagtttggtttatattttggagaaggaattggagtcagaggtaa |
27465123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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