View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734-Insertion-12 (Length: 290)
Name: NF4734-Insertion-12
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734-Insertion-12 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 25379633 - 25379466
Alignment:
| Q |
8 |
cctggtccactgtgagaatgaaaaaacttgcacaataagcacataaaatatagtcattaaaatgataattaaacaaatagattgattagtttaccttgtc |
107 |
Q |
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| T |
25379633 |
cctggtccactgtgagaatgaaaaaacttgcacaataagcacataaaatatagtcattaaaatgataattaaacaaatagattgattagtttaccttgtc |
25379534 |
T |
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| Q |
108 |
tttttcttcgccgagaagaacgagagaactttttgggtggttctttagtagttttttctgaatcgcca |
175 |
Q |
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| T |
25379533 |
tttttcttcgccgagaagaacgagagaactttttgggtggttctttagtagttttttctgaatcgcca |
25379466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 25379385 - 25379352
Alignment:
| Q |
257 |
cttagatgaattatccacttcgtccttgtcatca |
290 |
Q |
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| T |
25379385 |
cttagatgaattatccacttcgtcctcgtcatca |
25379352 |
T |
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