View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734-Insertion-13 (Length: 284)
Name: NF4734-Insertion-13
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734-Insertion-13 |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 27 - 284
Target Start/End: Original strand, 4534762 - 4535019
Alignment:
| Q |
27 |
tctgtaggttgcttttaataacggtattgatctcgctggaaaccccagcagaatgacgtcgatgatggacaagatctcgacctttccatccttagatgct |
126 |
Q |
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| T |
4534762 |
tctgtaggttgcttttaatcaccgtattgatctcgcaggaaactcctgcagaatgacgttgatgacagacaagatctcgacctttccatccttagatgct |
4534861 |
T |
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| Q |
127 |
caacttattcattgctcaattttatttataaaaaatctgaatttatattcattgatagttccattcatttcttttgtagtgacatttgaatcatcaagag |
226 |
Q |
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| T |
4534862 |
caacttattcattgctcaattttatttataaaaaatctgaatttatattcattgatagttccattcatttcttttgtagtgacatttgaatcatcaagag |
4534961 |
T |
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| Q |
227 |
atttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgtaa |
284 |
Q |
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| T |
4534962 |
atttttaatctattgttgagaagaacttttttgattagtttctcttttatctatgtaa |
4535019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 24062043 - 24061900
Alignment:
| Q |
144 |
aattttatttataaaaaatctgaatttatattcattgatagtt-ccattcatttcttttgtagtgacatttgaatc-atcaagagatttttaatctattg |
241 |
Q |
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| T |
24062043 |
aattttatttactagaaatataaatttatattcattaatattttccattcatttcttttttagtggcatttggagccatcaagagatgttgaatctattg |
24061944 |
T |
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| Q |
242 |
ttgagaagaac-ttttttgattagtttctcttttatctatgtaa |
284 |
Q |
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| T |
24061943 |
ttgaaaaaaacttttttttattagtttatcgtttatttatgtaa |
24061900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 3975660 - 3975751
Alignment:
| Q |
188 |
cattcatttcttttgtagtgacatttgaa-tcatcaagagatttttaatctattgttgagaag-aacttttttgattagtttctcttttatc |
277 |
Q |
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| T |
3975660 |
cattcatttcttttgtagttaactttggagttatcaagagatgttgaatctattgttgagaagtaatttttttgactactttatcttttatc |
3975751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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