View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734-Insertion-14 (Length: 260)
Name: NF4734-Insertion-14
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734-Insertion-14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 8 - 260
Target Start/End: Complemental strand, 34699807 - 34699561
Alignment:
| Q |
8 |
agatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaacgtcttccacgcgtgctacagtttctgta |
107 |
Q |
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| T |
34699807 |
agatttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaatgtcttccacacgtgctacagtttcaata |
34699708 |
T |
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| Q |
108 |
agcaaagaaactaccgtgaccacttgaattacttccattattgggatttccatttttgcatcaccaagggatgatgtttcttttgcattaacattgtgtt |
207 |
Q |
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| T |
34699707 |
agcaaagaaattaccgtgaccacttgaattacttccattattgggatttccatttttgcatcaccaagggatgatgtttcttttgcattaacatt----- |
34699613 |
T |
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| Q |
208 |
tgtgtgtgtttgaatatgattttaataaattttgtagctcttgtgtagcaata |
260 |
Q |
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| T |
34699612 |
-gtgtgtgtttgaatatgattttaataaattttgtagctcttgtgtagcaata |
34699561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 173
Target Start/End: Complemental strand, 34683569 - 34683408
Alignment:
| Q |
12 |
ttgtcacactttgacatttctggtttgaatttagctaattttgatagttcttcaacacttttcacaacgtcttccacgcgtgctacagtttctgtaagca |
111 |
Q |
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| T |
34683569 |
ttgtcacatttggacatttctggtttaaacttagctaaatctgataattcttcaacacatttcacaatgtcttctacacgagctacaatttcactaagca |
34683470 |
T |
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| Q |
112 |
aagaaactaccgtgaccacttgaattacttccattattgggatttccatttttgcatcacca |
173 |
Q |
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| T |
34683469 |
aagaaacaactgtgaccacttgaattaattctattattgggatttcgagttttgcatcacca |
34683408 |
T |
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