View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734-Insertion-2 (Length: 826)
Name: NF4734-Insertion-2
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 660
Target Start/End: Original strand, 49608913 - 49609570
Alignment:
| Q |
8 |
ggattagcccggggtggtggtgcgttaagcctcggagtgtgttgattcttccttggtgtcaatttggataaattatgttcgattatttccgtgttaattt |
107 |
Q |
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| T |
49608913 |
ggattagtccggggtggtggtgcgttaagcctcggagtgtgttgattcttcct-gatgtcaatttggataagttaggttcgattatttccgtgttaattt |
49609011 |
T |
|
| Q |
108 |
tggtgggatggtttagcttcttnnnnnnnnttaagatannnnnnnnnataaattgtaatttggatatattaaaacccaatnnnnnnnnnnnnnnnnn-tt |
206 |
Q |
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| T |
49609012 |
gggtgggatggtttagcttcttaaaaaaaactaagatatttttttttataaactgtaatttggatatattaaaaaccaatacaaacaaacccaaaaagtt |
49609111 |
T |
|
| Q |
207 |
gtataagatcgtatcatatattttttaaaagttatgcaaaccaaacggtaagtatttaatttgttagataggatgacttttttactttataacgcatcca |
306 |
Q |
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| T |
49609112 |
gtataagatcggatcatatattttttaaaagttatgcaaaccaaaccgtaagtatttaatttgttagataggatgacttttttactttataatgcatcca |
49609211 |
T |
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| Q |
307 |
aattgtccctcnnnnnnnnnga-----cgcatctaaattgcacggcaaacacccttatccaacactacatgaaatcaaaccaaaacccgagttcacttca |
401 |
Q |
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| T |
49609212 |
aattgtccctcaaaaaaaaaaaaaaaacgcatccaaattgcatggcaaacacccttatccaacactacatgaaatcaaaccaaaacccgagttcacttca |
49609311 |
T |
|
| Q |
402 |
attaaatatttaatcatttacgtcaaagtggacaatcaactcaccgagttatatataaatcaaattgattttgtttatcaaaaccatatttattttttat |
501 |
Q |
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| T |
49609312 |
attaaatatttaatcctttacgtcaaagtggacaatcaactcaccgagttatatataaatcaaattgattttgtttatcaaaaccatatttattttttat |
49609411 |
T |
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| Q |
502 |
tttcaccttctttaactatgagcaatcaacttcgttcnnnnnnnnnnnnnctatgagcaatctactatttactaaatgtgataatcagaattttaccatg |
601 |
Q |
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| T |
49609412 |
tttcaccttctttagctatgagcaatcaacttcgttcaaaaaatgaaaaactatgagcaatctactatttactaaatgtgataatcagaatgttaccatg |
49609511 |
T |
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| Q |
602 |
agagaatgtacgagatgatggcacaagtggttgctcgaccggagatgagacctttaccg |
660 |
Q |
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| T |
49609512 |
agagaatgtacgagatgatggcacacgtgtttgcgcgaccggagatgagacctttaccg |
49609570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 658 - 826
Target Start/End: Original strand, 49609640 - 49609808
Alignment:
| Q |
658 |
ccgtagattgtggaatcatcagtgtcgtaaacacagatagttccgtcgacattgggaatctctaaggcctgaaaagcgtaaagggatgaaagatattaaa |
757 |
Q |
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| T |
49609640 |
ccgtagatggtggaatcatcagtgtcgtaaacacagatagtttcgtcgacattgggaatctctaaggcctgaaaagcgtaaagggatgaaagatattaaa |
49609739 |
T |
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| Q |
758 |
gaaacaaaagaaaacaagagtagtggaatcgtggtatgaataaatgagacaggggttacccagatacga |
826 |
Q |
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| T |
49609740 |
gaaacaaaagaaaacaagagtagtggactcgtggtatgaataaatgagacaggggttacccagatacga |
49609808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 493 - 634
Target Start/End: Original strand, 49614482 - 49614624
Alignment:
| Q |
493 |
attttttattttcaccttctttaactatgagcaatcaacttcgttcnnnnnnnnnnnnn-ctatgagcaatctactatttactaaatgtgataatcagaa |
591 |
Q |
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| T |
49614482 |
atttttcattttcaccttctttaaatatgagcaatcaacttcgtccaaaaaaaagaaaaactatgagcgatctactatttaataaaagtgataattggaa |
49614581 |
T |
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| Q |
592 |
ttttaccatgagagaatgtacgagatgatggcacaagtggttg |
634 |
Q |
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| T |
49614582 |
tgttaccatgagagaatgtaacagatgatggcgcaactggttg |
49614624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 658 - 771
Target Start/End: Original strand, 49614720 - 49614832
Alignment:
| Q |
658 |
ccgtagattgtggaatcatcagtgtcgtaaacacagatagttccgtcgacattgggaatctctaaggcctgaaaagcgtaaagggatgaaagatattaaa |
757 |
Q |
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||||||| |||||| |||| ||| ||| || ||||||||||||||| | ||||||| |||| |||||||||| |||||||||| ||||| ||| | |
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| T |
49614720 |
ccgtagaaggtggaagcatcggtggtgtatacgcagatagttccgtcgtcgttgggaagctcttcagcctgaaaag-gtaaagggattaaagagatttga |
49614818 |
T |
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| Q |
758 |
gaaacaaaagaaaa |
771 |
Q |
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| T |
49614819 |
gaaacaaaacaaaa |
49614832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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