View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4734-Insertion-4 (Length: 673)
Name: NF4734-Insertion-4
Description: NF4734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4734-Insertion-4 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 332; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 8 - 372
Target Start/End: Original strand, 1909111 - 1909483
Alignment:
| Q |
8 |
gaagctaggtctccaaaccatatgttgcttttcatcctcaaccaaccagcacagtttatgatttttcaacttatttgagtttagttcttttgctcatttc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1909111 |
gaagctaggtctccaaaccatatgttgcttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttc |
1909210 |
T |
|
| Q |
108 |
tgatttcaatgattgttaaagggttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtat |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1909211 |
tgatttcaatgattgttaaagtgttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtat |
1909310 |
T |
|
| Q |
208 |
tatggggcaaagctacagaagagatagaggaagatgttggcagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1909311 |
tatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaac |
1909410 |
T |
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| Q |
308 |
ttttgaaaataaaacaaatggaaatgtttaaaatatc--------attgagattcaaatacaatccgaacttc |
372 |
Q |
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| T |
1909411 |
ttttgaaaataaaacaaatggaaatgtttaaaatatcattatcaaattgagattcaaatacaatccgaacttc |
1909483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 8 - 371
Target Start/End: Original strand, 1904878 - 1905249
Alignment:
| Q |
8 |
gaagctaggtctccaaaccatatgttgcttttcatcctcaaccaaccagcacagtttatgatttttcaacttatttgagtttagttcttttgctcatttc |
107 |
Q |
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| T |
1904878 |
gaagctaggtctccaaaccatatgttgcttttcatcctcaaccaaccagcacaatttatgatttttcaacttatttgagtttagttcttttgctcatttc |
1904977 |
T |
|
| Q |
108 |
tgatttcaatgattgttaaagggttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtat |
207 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1904978 |
tgatttcaatgattgttaaagtgttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtat |
1905077 |
T |
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| Q |
208 |
tatggggcaaagctacagaagagatagaggaagatgttggcagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaac |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1905078 |
tatggggcaaagctacagaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaac |
1905177 |
T |
|
| Q |
308 |
ttttgaaaataaaacaaatggaaatgtttaaaatatc--------attgagattcaaatacaatccgaactt |
371 |
Q |
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| T |
1905178 |
ttttgaaaataaaacaaatggaaatgtttaaaatatcattatcaaattgagattcaaatacaatccgaactt |
1905249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 125 - 343
Target Start/End: Original strand, 1899533 - 1899750
Alignment:
| Q |
125 |
aaagggttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctaca |
224 |
Q |
| |
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|||| |||||||||| ||||||||| | |||| |||||||||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||| |
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| T |
1899533 |
aaagtgttcatttgtatatatttttttt-cattgtgcagtataattggagccacaatagtatcgattggcctttatgctatattatggggcaaagctaca |
1899631 |
T |
|
| Q |
225 |
gaagagatagaggaagatgttggcagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaa |
324 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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| T |
1899632 |
gaagagatagaggaagatgttggtagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcacacttttgacaataaaacaa |
1899731 |
T |
|
| Q |
325 |
atggaaatgtttaaaatat |
343 |
Q |
| |
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|||||| |||||||||||| |
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| T |
1899732 |
atggaactgtttaaaatat |
1899750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 439 - 627
Target Start/End: Original strand, 1909558 - 1909746
Alignment:
| Q |
439 |
tcaaactaatccatcgaaattgataccagaaaaattgaatatgacaacttgagacgagcacactctaaaattttaagccaacactatcacatcaatccaa |
538 |
Q |
| |
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|||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || ||||| |||| |
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| T |
1909558 |
tcaaactagtccaccgaaattgataccaggaaaattgaatatgacaacttgagacgaatacactctaaaattttaagtcaacactaacagatcaacccaa |
1909657 |
T |
|
| Q |
539 |
atgagtttataaattgaattttgtaatgaatcgttagatatagctacaataaaaatatgacatttcaatttgtttgtcagtttcatgaa |
627 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1909658 |
atgagtttataaattgaattttgtaatgaatcgttagatatatctacaataaaaatatgacatttcaatttgtttgccagtttcatgaa |
1909746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 130 - 340
Target Start/End: Original strand, 1893627 - 1893835
Alignment:
| Q |
130 |
gttcatttgtgtatatttttaatgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaaga |
229 |
Q |
| |
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|||||||||||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| | |
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| T |
1893627 |
gttcatttgtgtatattttt--ttcattgtgcagtataattggagccacaataatcacaattggtctttatgctgtattatggggcaaagcaacagaaaa |
1893724 |
T |
|
| Q |
230 |
gatagaggaagatgttggcagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatgga |
329 |
Q |
| |
|
|||||||||||||||||| || | ||||||||||||| ||||||||||||||||| ||||| | ||||||| |||| |||||||| |||||||||||| |
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| T |
1893725 |
gatagaggaagatgttggtagcctagagtcaccatctatagagaatgcacctcttttacaaagttatagaactgaaacatttgaaaagaaaacaaatgga |
1893824 |
T |
|
| Q |
330 |
aatgtttaaaa |
340 |
Q |
| |
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||| ||||||| |
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| T |
1893825 |
aatatttaaaa |
1893835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 151 - 340
Target Start/End: Original strand, 1914566 - 1914758
Alignment:
| Q |
151 |
atgcattttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgt---tgg |
247 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1914566 |
atgcattttgcagtataattggagccataataatctcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttggtgg |
1914665 |
T |
|
| Q |
248 |
cagtttggagtcaccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaa |
340 |
Q |
| |
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|| ||| |||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||| |||| | |||||||||||||||| |
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|
| T |
1914666 |
tagcttgcagtcaccatctactgagaatgcacctcttttgcaaagcaatagagcagaaacttttgaaaagaaaatagatggaaatgtttaaaa |
1914758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 161 - 340
Target Start/End: Original strand, 1881482 - 1881661
Alignment:
| Q |
161 |
cagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttggcagtttggagtca |
260 |
Q |
| |
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||||||||||||||||| ||| || |||| ||||||||||||||| | ||||||||| | | |||||||||||||||||||||||| || | |||||| |
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| T |
1881482 |
cagtataattggagccataatcatctcaacaggtctttatgctgtaatgtggggcaaatcaagagaagagatagaggaagatgttggtagctcagagtca |
1881581 |
T |
|
| Q |
261 |
ccatctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgtttaaaa |
340 |
Q |
| |
|
||||||| || ||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||| |
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| T |
1881582 |
ccatctacagataatgcacctctattgcaaagctgtagaattgaaacttttgaaaacaaaacaaatggaaatgtttaaaa |
1881661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 162 - 337
Target Start/End: Original strand, 1888486 - 1888661
Alignment:
| Q |
162 |
agtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagagatagaggaagatgttggcagtttggagtcac |
261 |
Q |
| |
|
||||||||||||||| ||| || |||||||| |||||||||||| | ||||||||| | | |||||||||||||||||||||||| || | ||||||| |
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| T |
1888486 |
agtataattggagccttaatcatctcaattggcctttatgctgtaatgtggggcaaatcaagagaagagatagaggaagatgttggtagctcagagtcac |
1888585 |
T |
|
| Q |
262 |
catctaatgagaatgcacctcttttgcaaagctctagaactcaaacttttgaaaataaaacaaatggaaatgttta |
337 |
Q |
| |
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|||||| || ||||||||||| |||||||||| ||||| | ||||||||||||| ||||||||||||| |||||| |
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| T |
1888586 |
catctacagataatgcacctctattgcaaagctgtagaattgaaacttttgaaaacaaaacaaatggaattgttta |
1888661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 156 - 230
Target Start/End: Original strand, 46439 - 46513
Alignment:
| Q |
156 |
ttttgcagtataattggagccacaataatatcaattggtctttatgctgtattatggggcaaagctacagaagag |
230 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||||| ||||| | ||||| ||||| | ||||||| |
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|
| T |
46439 |
ttttgcagtttaattggagccacaataatatcaattgggttttatactgtaatgtggggtaaagcaaaagaagag |
46513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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